Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.2e-108 396.4 185 100.0
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.6e-106 388.7 185 98.9
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 4.2e-40 168.7 164 47.6
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 7.2e-40 167.9 164 46.3
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.2e-39 167.2 164 47.0
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.2e-39 167.2 164 47.6
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 47.0
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 46.3
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 2.1e-39 166.4 164 45.7
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 2.1e-39 166.4 164 45.7
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 47.0
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 3.6e-39 165.6 165 44.8
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.6e-39 165.6 175 44.6
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.6e-39 165.6 164 45.7
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 45.7
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 4.6e-39 165.2 175 44.6
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 47.0
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 46.3
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 46.3
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 45.7
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 46.3
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 47.6
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 6.1e-39 164.9 164 45.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 6.1e-39 164.9 164 45.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 6.1e-39 164.9 164 45.1
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 6.1e-39 164.9 162 45.7
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 6.1e-39 164.9 163 46.6
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 45.7
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 44.5
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 45.7
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 46.3
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 45.1
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 45.7
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.0e-38 164.1 172 43.0
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.0e-38 164.1 162 46.9
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.4e-38 163.7 163 46.0
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.8e-38 163.3 164 45.1
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.8e-38 163.3 163 46.0
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.3e-38 162.9 164 45.7
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.3e-38 162.9 163 45.4
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 2.3e-38 162.9 164 45.1
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 3.0e-38 162.5 163 46.6
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.0e-38 162.5 161 45.3
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 3.0e-38 162.5 161 45.3
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 3.0e-38 162.5 161 45.3
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 3.0e-38 162.5 177 44.6
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 3.0e-38 162.5 162 45.7
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 44.5
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.1
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 44.5
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 42.7
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 44.5
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 46.3
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 45.7
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 45.1
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 43.9
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 6.7e-38 161.4 162 45.1
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.7e-38 161.4 164 45.1
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 6.7e-38 161.4 164 45.7
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 6.7e-38 161.4 177 43.5
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 8.8e-38 161.0 162 45.1
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 8.8e-38 161.0 164 43.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 8.8e-38 161.0 163 45.4
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 44.5
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.1e-37 160.6 162 44.4
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 44.5
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 44.5
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 45.1
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 45.1
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 45.1
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 45.1
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.5e-37 160.2 165 44.8
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 2.0e-37 159.8 164 48.2
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 2.0e-37 159.8 163 44.8
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.0e-37 159.8 164 44.5
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 2.6e-37 159.5 164 42.7
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 2.6e-37 159.5 164 43.9
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 3.3e-37 159.1 162 45.1
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 3.3e-37 159.1 164 44.5
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 3.3e-37 159.1 164 43.9
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 3.3e-37 159.1 164 44.5
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 3.3e-37 159.1 164 44.5
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 3.3e-37 159.1 164 44.5
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 4.4e-37 158.7 162 44.4
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 4.4e-37 158.7 162 44.4
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.4e-37 158.7 162 45.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.4e-37 158.7 165 43.6
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 4.4e-37 158.7 164 43.9
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 4.4e-37 158.7 164 43.3
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 4.4e-37 158.7 164 45.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 5.7e-37 158.3 162 45.1
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.7e-37 158.3 164 43.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 7.4e-37 157.9 176 43.2
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 7.4e-37 157.9 164 42.7
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 9.7e-37 157.5 170 44.1
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 9.7e-37 157.5 164 45.1
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.3e-36 157.1 164 43.3
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-36 157.1 161 45.3
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.3e-36 157.1 164 45.1
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.7e-36 156.8 164 43.9
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.7e-36 156.8 164 43.3
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 1.7e-36 156.8 164 43.3
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.7e-36 156.8 171 43.3
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.7e-36 156.8 165 44.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.8e-36 156.0 164 44.5
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.8e-36 156.0 176 42.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 3.7e-36 155.6 164 42.1
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 4.8e-36 155.2 177 43.5
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 4.8e-36 155.2 163 43.6
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 4.8e-36 155.2 163 42.9
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.3e-36 154.8 165 43.0
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 8.2e-36 154.5 161 44.1
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.8e-35 153.3 159 45.3
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.4e-35 152.9 164 41.5
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 3.1e-35 152.5 164 42.7
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 5.3e-35 151.8 163 42.3
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 5.3e-35 151.8 163 42.9
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 6.9e-35 151.4 163 43.6
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.2e-34 150.6 164 42.1
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.4e-34 149.1 163 41.7
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.5e-34 148.7 176 41.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.4e-32 143.7 188 38.3
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.1e-31 139.8 164 40.2
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 5.2e-30 135.2 163 36.2
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.6e-29 132.9 162 40.7
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 7.4e-29 131.3 163 37.4
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.2e-28 129.8 128 48.4
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 1.8e-27 126.7 115 47.8
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.4e-27 126.3 161 34.8
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 5.3e-27 125.2 178 34.3
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.2e-25 119.8 162 36.4
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.8e-25 119.0 129 41.1
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 6.5e-25 118.2 107 48.6
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 5.2e-22 108.6 164 36.0
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.5e-21 107.1 77 54.5
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.4e-19 100.5 164 33.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 3.1e-19 99.4 163 34.4
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.1e-15 86.7 71 53.5
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 4.7e-15 85.5 62 56.5
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.0e-14 82.8 58 62.1
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 7.5e-13 78.2 79 40.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-11 73.9 56 58.9
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 3.5e-10 69.3 55 54.5
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.2e-08 61.6 50 54.0
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 3.6e-07 59.3 82 37.8
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.0e-06 55.8 37 62.2


User provided reference genes

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