Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.9e-199 697.2 378 100.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.6e-149 531.2 392 78.3
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 8.1e-139 497.7 412 66.5
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 4.0e-138 495.4 330 78.8
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 8.4e-136 487.6 381 74.0
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 2.3e-133 479.6 326 76.7
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.7e-131 471.9 325 74.8
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.8e-130 469.9 325 75.1
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.2e-130 468.4 385 69.4
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.2e-129 467.2 330 75.2
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.3e-128 463.8 325 74.5
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 2.2e-128 463.0 319 75.9
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 3.2e-127 459.1 334 72.8
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.1e-124 450.7 377 69.2
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.3e-124 448.7 324 72.2
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.0e-122 442.2 320 72.2
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 2.6e-121 439.5 324 69.4
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 9.9e-121 437.6 326 71.2
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-120 436.4 326 70.9
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.9e-120 436.0 307 74.9
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 3.8e-120 435.6 317 71.6
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 6.4e-120 434.9 317 70.3
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 2.4e-119 433.0 379 64.4
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 3.2e-119 432.6 325 70.5
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 3.2e-119 432.6 328 70.7
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 4.2e-119 432.2 335 69.0
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 5.4e-119 431.8 325 69.5
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.6e-118 430.3 325 70.8
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 4.6e-118 428.7 326 69.9
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 7.9e-118 427.9 314 71.0
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 7.9e-118 427.9 326 69.9
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.0e-117 427.6 321 71.0
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.8e-117 426.8 325 70.5
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.3e-117 426.4 328 69.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 3.9e-117 425.6 323 70.0
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 3.9e-117 425.6 319 69.3
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 6.7e-117 424.9 387 64.3
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 6.7e-117 424.9 381 62.5
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 8.7e-117 424.5 354 64.7
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.5e-116 423.7 321 70.4
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 4.3e-116 422.2 317 70.7
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 7.4e-116 421.4 315 70.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.3e-115 420.6 348 66.1
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.8e-115 419.5 328 67.4
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 3.6e-115 419.1 322 68.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.8e-115 418.7 324 67.6
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 4.8e-115 418.7 379 61.7
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 6.2e-115 418.3 323 69.3
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 8.1e-115 417.9 324 68.8
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.1e-114 417.5 321 69.5
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.8e-114 416.8 325 68.6
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 4.0e-114 415.6 323 69.3
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 5.3e-114 415.2 325 68.0
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.5e-113 413.7 303 71.6
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 2.6e-113 412.9 323 66.9
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 9.9e-113 411.0 329 64.7
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.3e-112 410.6 323 66.3
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.3e-112 410.6 325 67.1
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.2e-112 409.8 334 66.5
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.9e-112 408.7 321 66.4
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 1.1e-111 407.5 322 65.5
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.9e-111 406.8 310 69.7
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 3.2e-111 406.0 334 64.4
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.5e-111 405.2 327 65.7
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.2e-110 404.1 319 65.8
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.7e-110 402.9 325 65.8
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.8e-109 400.2 321 64.2
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 3.0e-109 399.4 323 65.6
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 3.9e-109 399.1 295 71.2
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 5.1e-109 398.7 321 64.5
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.1e-109 398.7 337 63.2
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.7e-109 398.3 337 63.5
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 8.7e-109 397.9 330 63.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 8.7e-109 397.9 322 66.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.9e-108 396.7 364 60.2
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.3e-108 395.6 332 64.2
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 5.6e-108 395.2 322 64.0
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 7.4e-108 394.8 326 64.7
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 9.6e-108 394.4 326 62.9
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.1e-107 393.3 322 64.6
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 3.7e-107 392.5 321 63.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 3.7e-107 392.5 321 63.9
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 6.2e-107 391.7 337 63.8
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.1e-106 391.0 318 63.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.8e-106 390.2 311 67.5
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 3.1e-106 389.4 322 66.1
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 3.1e-106 389.4 322 66.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 4.0e-106 389.0 392 54.8
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 5.3e-106 388.7 322 62.7
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.4e-105 386.0 326 63.5
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 7.6e-105 384.8 323 63.8
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 2.9e-104 382.9 346 60.7
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.4e-103 380.6 286 68.9
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.9e-103 380.2 284 70.4
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 2.5e-103 379.8 339 61.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.1e-102 376.7 353 60.9
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 8.7e-101 371.3 358 62.3
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.1e-100 370.9 340 60.0
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 5.7e-100 368.6 375 54.9
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 9.6e-100 367.9 305 63.9
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 3.7e-99 365.9 307 64.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 2.4e-98 363.2 365 57.5
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.5e-95 353.2 289 67.1
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 3.2e-95 352.8 397 54.2
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.2e-95 351.7 445 48.5
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 7.2e-95 351.7 297 61.3
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.3e-91 340.9 379 51.2
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 4.8e-91 339.0 297 59.6
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.8e-80 302.8 303 56.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.4e-79 300.8 299 55.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.6e-78 296.2 292 59.9
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.6e-73 280.0 225 68.0
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.2e-65 254.6 390 40.3
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 3.5e-65 253.1 228 61.0
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 6.5e-64 248.8 215 62.8
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.2e-60 238.0 326 42.9
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.6e-54 217.6 304 46.7
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 5.7e-52 209.1 155 70.3
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 7.3e-47 192.2 130 75.4
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-45 187.2 112 81.2
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.5e-41 173.3 392 32.1
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.9e-39 167.5 147 60.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.9e-39 167.5 257 40.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 7.3e-39 165.6 112 77.7
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.1e-38 164.1 171 56.1
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 8.0e-38 162.2 156 57.1
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 8.9e-37 158.7 142 59.9
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 2.0e-36 157.5 361 32.4
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 9.8e-36 155.2 207 49.3
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 8.9e-29 132.1 98 66.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 6.0e-25 119.4 85 71.8
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 9.5e-23 112.1 170 40.0
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.4e-20 103.6 135 51.1
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.6e-20 102.4 66 80.3
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 9.9e-20 102.1 395 27.1
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 8.4e-19 99.0 81 66.7
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 8.4e-19 99.0 68 76.5
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-18 98.2 174 37.9
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 2.4e-18 97.4 134 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.2e-17 95.1 84 58.3
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 1.2e-17 95.1 66 72.7
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 2.1e-17 94.4 163 35.6
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-15 88.6 52 84.6
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.9e-15 87.8 56 76.8
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 6.2e-14 82.8 56 71.4
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.1e-13 80.5 60 66.7
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.1e-13 80.5 88 55.7
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 3.1e-13 80.5 62 69.4
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 4.0e-13 80.1 93 50.5
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 8.4e-11 72.4 166 30.7
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 9.3e-10 68.9 366 26.0
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 6.0e-09 66.2 110 42.7
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 9.6e-07 58.9 33 81.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 9.6e-07 58.9 60 50.0
SHI03487 Sapria himalayana HOM05D002033 ORTHO05D003975 2.1e-06 57.8 110 35.5
TAR636G1239 Trochodendron aralioides HOM05D000271 ORTHO05D000742 6.2e-06 56.2 35 74.3


User provided reference genes

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