Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.5e-104 382.1 194 100.0
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.1e-25 120.9 104 59.6
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 1.9e-22 110.2 99 53.5
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 7.1e-22 108.2 170 42.9
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 9.2e-22 107.8 110 51.8
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 3.5e-21 105.9 97 52.6
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 7.8e-21 104.8 70 70.0
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 3.0e-20 102.8 70 70.0
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 3.9e-20 102.4 99 52.5
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 3.9e-20 102.4 99 52.5
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.9e-20 102.4 104 48.1
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.9e-20 102.4 89 57.3
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 6.6e-20 101.7 111 51.4
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 8.6e-20 101.3 99 51.5
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.9e-19 100.1 103 49.5
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.9e-19 100.1 127 45.7
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 2.5e-19 99.8 144 43.8
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 3.3e-19 99.4 93 51.6
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 5.6e-19 98.6 104 52.9
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 5.6e-19 98.6 105 52.4
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 5.6e-19 98.6 93 51.6
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 7.3e-19 98.2 112 49.1
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 9.6e-19 97.8 71 64.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 9.6e-19 97.8 102 50.0
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.2e-18 97.4 105 46.7
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.8e-18 96.3 115 48.7
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.8e-18 96.3 69 66.7
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.6e-18 95.9 145 44.1
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 6.2e-18 95.1 108 51.9
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.8e-17 93.6 70 65.7
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.8e-17 93.6 163 37.4
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.4e-17 93.2 93 50.5
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 5.2e-17 92.0 107 49.5
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 5.2e-17 92.0 80 56.2
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 6.9e-17 91.7 69 65.2
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.2e-16 90.9 140 42.1
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 1.2e-16 90.9 136 40.4
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 1.5e-16 90.5 72 63.9
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.5e-16 90.5 103 52.4
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.5e-16 90.5 65 63.1
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.5e-16 90.5 106 44.3
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.6e-16 89.7 68 63.2
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 4.4e-16 89.0 136 38.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 5.8e-16 88.6 90 50.0
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 7.6e-16 88.2 72 58.3
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.6e-16 88.2 106 48.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 9.9e-16 87.8 161 38.5
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.3e-15 87.4 108 48.1
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.2e-15 86.7 81 55.6
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 2.2e-15 86.7 82 50.0
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.9e-15 85.5 106 45.3
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.9e-15 85.5 142 37.3
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 8.4e-15 84.7 148 38.5
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 8.4e-15 84.7 93 45.2
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 8.4e-15 84.7 72 55.6
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 8.4e-15 84.7 172 33.7
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.1e-14 84.3 154 37.7
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.4e-14 84.0 106 43.4
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 2.4e-14 83.2 112 41.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 3.2e-14 82.8 71 52.1
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.2e-14 82.4 106 45.3
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.2e-14 82.4 142 36.6
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 5.4e-14 82.0 135 35.6
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 9.3e-14 81.3 78 56.4
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 9.3e-14 81.3 113 41.6
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.1e-13 80.1 72 54.2
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 2.7e-13 79.7 71 54.9
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 4.6e-13 79.0 83 48.2
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 4.6e-13 79.0 143 35.7
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 6.0e-13 78.6 71 52.1
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 6.0e-13 78.6 83 47.0
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 6.0e-13 78.6 145 36.6
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.0e-13 78.6 109 43.1
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 7.8e-13 78.2 50 72.0
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 7.8e-13 78.2 83 47.0
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 7.8e-13 78.2 144 34.7
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.3e-12 77.4 87 43.7
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 3.0e-12 76.3 132 34.8
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 3.0e-12 76.3 73 50.7
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.0e-12 76.3 145 36.6
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 3.0e-12 76.3 73 50.7
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 3.9e-12 75.9 72 51.4
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 5.1e-12 75.5 108 42.6
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 6.6e-12 75.1 146 34.9
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 8.7e-12 74.7 68 55.9
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.5e-11 73.9 72 50.0
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 4.3e-11 72.4 140 34.3
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 4.3e-11 72.4 68 51.5
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 7.3e-11 71.6 67 50.7
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 7.3e-11 71.6 65 49.2
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 9.6e-11 71.2 63 54.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.3e-10 70.9 72 44.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.6e-10 70.5 91 41.8
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-10 70.1 142 33.1
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.1e-10 70.1 94 41.5
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 2.8e-10 69.7 93 41.9
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 2.8e-10 69.7 93 41.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 2.8e-10 69.7 93 41.9
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.1e-09 67.8 93 40.9
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.1e-09 67.8 139 33.1
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.4e-09 67.4 73 43.8
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.4e-08 62.8 67 44.8
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 4.5e-08 62.4 134 34.3
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 4.9e-07 58.9 134 32.8
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 4.9e-07 58.9 49 49.0
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.4e-06 55.5 142 30.3


User provided reference genes

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