Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 1.1e-63 246.5 123 100.0
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 1.6e-35 152.9 119 64.7
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 3.9e-34 148.3 120 65.0
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 3.3e-33 145.2 117 64.1
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 1.0e-29 133.7 113 64.6
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 6.5e-29 131.0 117 62.4
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 1.9e-28 129.4 97 67.0
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 4.2e-28 128.3 120 60.0
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 2.7e-27 125.6 96 68.8
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 1.3e-26 123.2 117 62.4
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 5.1e-26 121.3 113 62.8
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 3.7e-24 115.2 99 63.6
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 1.4e-23 113.2 118 55.1
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.4e-23 112.5 117 59.8
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.4e-23 112.5 99 63.6
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 2.4e-23 112.5 99 62.6
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 2.4e-23 112.5 131 58.0
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 2.4e-23 112.5 114 59.6
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 3.1e-23 112.1 92 65.2
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 4.1e-23 111.7 123 55.3
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 5.3e-23 111.3 122 51.6
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 5.3e-23 111.3 132 58.3
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 6.9e-23 110.9 120 53.3
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 9.0e-23 110.5 98 64.3
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 9.0e-23 110.5 123 54.5
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.2e-22 110.2 99 62.6
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 1.2e-22 110.2 92 65.2
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.5e-22 109.8 99 62.6
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 1.5e-22 109.8 102 62.7
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 2.0e-22 109.4 100 62.0
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 2.0e-22 109.4 100 62.0
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.0e-22 109.4 99 61.6
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 5.9e-22 107.8 103 64.1
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 5.9e-22 107.8 122 49.2
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 7.6e-22 107.5 100 61.0
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 7.6e-22 107.5 100 61.0
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 7.6e-22 107.5 122 52.5
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 1.0e-21 107.1 107 54.2
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.7e-21 106.3 95 58.9
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 1.7e-21 106.3 98 61.2
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 2.2e-21 105.9 124 54.8
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 2.9e-21 105.5 122 50.0
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 3.8e-21 105.1 122 55.7
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 3.8e-21 105.1 107 57.0
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 5.0e-21 104.8 107 57.9
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 5.0e-21 104.8 127 53.5
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 1.4e-20 103.2 109 58.7
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 1.9e-20 102.8 91 58.2
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 1.9e-20 102.8 91 58.2
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 1.9e-20 102.8 100 54.0
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 2.5e-20 102.4 122 50.8
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 3.2e-20 102.1 107 55.1
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 5.5e-20 101.3 125 52.0
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 5.5e-20 101.3 119 51.3
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 7.2e-20 100.9 103 63.1
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.2e-19 100.1 119 50.4
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 1.2e-19 100.1 93 59.1
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 1.2e-19 100.1 115 50.4
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 3.6e-19 98.6 92 65.2
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 7.9e-19 97.4 128 50.8
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 7.9e-19 97.4 128 52.3
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 3.0e-18 95.5 119 50.4
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 3.9e-18 95.1 95 58.9
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 6.7e-18 94.4 102 56.9
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 8.8e-18 94.0 102 53.9
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 1.1e-17 93.6 91 56.0
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 1.5e-17 93.2 108 58.3
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 1.5e-17 93.2 130 50.0
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.9e-17 92.8 124 52.4
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 1.9e-17 92.8 123 48.0
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 1.9e-17 92.8 110 50.9
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 3.3e-17 92.0 84 59.5
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 5.7e-17 91.3 104 52.9
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 1.4e-15 86.7 113 54.0
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.8e-15 86.3 92 60.9
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 3.1e-15 85.5 92 51.1
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 3.1e-15 85.5 126 46.8
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 4.1e-15 85.1 88 52.3
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 5.3e-15 84.7 123 44.7
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 1.2e-14 83.6 99 53.5
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 1.2e-14 83.6 99 53.5
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 1.2e-14 83.6 99 53.5
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 2.6e-14 82.4 112 54.5
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 4.5e-14 81.6 86 58.1
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 5.9e-14 81.3 105 47.6
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 1.3e-13 80.1 124 47.6
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 1.7e-13 79.7 114 45.6
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 3.8e-13 78.6 104 48.1
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 3.8e-13 78.6 114 42.1
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 5.0e-13 78.2 128 42.2
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 5.0e-13 78.2 131 47.3
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 1.4e-12 76.6 99 50.5
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 1.4e-12 76.6 99 50.5
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 1.4e-12 76.6 84 57.1
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 1.9e-12 76.3 123 43.1
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 3.2e-12 75.5 127 40.9
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 4.2e-12 75.1 107 50.5
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 4.2e-12 75.1 113 44.2
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 5.5e-12 74.7 97 51.5
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 7.2e-12 74.3 96 51.0
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 7.2e-12 74.3 96 51.0
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 7.2e-12 74.3 101 50.5
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 9.4e-12 73.9 102 49.0
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 9.4e-12 73.9 94 51.1
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 9.4e-12 73.9 94 51.1
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 9.4e-12 73.9 126 42.9
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 1.6e-11 73.2 93 51.6
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 2.1e-11 72.8 97 50.5
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.7e-11 72.4 101 47.5
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.7e-11 72.4 101 47.5
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.7e-11 72.4 101 47.5
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 2.7e-11 72.4 123 42.3
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 3.6e-11 72.0 102 48.0
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 3.6e-11 72.0 94 52.1
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 3.6e-11 72.0 79 51.9
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 6.1e-11 71.2 120 42.5
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 6.1e-11 71.2 122 37.7
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 7.9e-11 70.9 102 44.1
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 1.0e-10 70.5 100 46.0
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 1.4e-10 70.1 112 45.5
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.4e-10 70.1 104 48.1
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.4e-10 70.1 96 49.0
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 2.3e-10 69.3 96 50.0
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.3e-10 69.3 103 46.6
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 2.6e-09 65.9 87 44.8
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 2.6e-09 65.9 126 44.4
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 3.3e-09 65.5 103 40.8
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 3.3e-09 65.5 87 44.8
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 3.3e-09 65.5 103 41.7
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 3.3e-09 65.5 87 44.8
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 3.3e-09 65.5 103 41.7
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 3.3e-09 65.5 66 53.0
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 3.3e-09 65.5 103 42.7
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 4.4e-09 65.1 140 39.3
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 4.4e-09 65.1 102 45.1
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 5.7e-09 64.7 112 42.0
Lsat_1_v5_gn_5_74361 Lactuca sativa HOM05D004695 ORTHO05D005372 7.4e-09 64.3 104 39.4
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 7.4e-09 64.3 82 46.3
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 9.7e-09 63.9 101 42.6
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 9.7e-09 63.9 101 42.6
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.3e-08 63.5 94 43.6
Peaxi162Scf00134g00214 Petunia axillaris HOM05D004695 ORTHO05D005372 2.8e-08 62.4 81 46.9
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 6.3e-08 61.2 132 37.9
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 6.3e-08 61.2 101 40.6
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 8.2e-08 60.8 121 38.0
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 8.2e-08 60.8 110 38.2
CsaV3_6G015120 Cucumis sativus L. HOM05D039226 ORTHO05D005372 1.1e-07 60.5 109 43.1
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 1.4e-07 60.1 82 41.5
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 1.8e-07 59.7 102 40.2
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 1.8e-07 59.7 102 40.2
ClCG06G005870 Citrullus lanatus HOM05D039226 ORTHO05D005372 3.1e-07 58.9 93 41.9
MELO3C021409.2 Cucumis melo HOM05D039226 ORTHO05D005372 3.1e-07 58.9 70 52.9
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 3.1e-07 58.9 84 44.0
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 9.1e-07 57.4 95 40.0
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.2e-06 57.0 101 41.6
ATR0564G302 Amborella trichopoda HOM05D004695 ORTHO05D005372 2.0e-06 56.2 111 35.1
Zm00001eb287450 Zea mays HOM05D062724 ORTHO05D049710 2.6e-06 55.8 110 37.3


User provided reference genes

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