Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-38 162.5 81 100.0
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 9.5e-29 129.8 80 82.5
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 2.8e-28 128.3 80 82.5
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.0e-26 122.1 74 82.4
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 9.8e-26 119.8 72 84.7
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 1.3e-25 119.4 72 83.3
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 2.9e-25 118.2 72 81.9
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 2.9e-25 118.2 72 83.3
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 3.7e-25 117.9 73 80.8
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 1.1e-24 116.3 72 81.9
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 1.1e-24 116.3 72 80.6
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.4e-24 115.9 72 80.6
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 1.4e-24 115.9 72 79.2
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 1.4e-24 115.9 72 79.2
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 1.8e-24 115.5 72 81.9
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 1.8e-24 115.5 87 72.4
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 1.8e-24 115.5 72 73.6
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.8e-24 115.5 72 79.2
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 2.4e-24 115.2 72 79.2
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.2e-24 114.8 72 79.2
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.2e-24 114.8 72 79.2
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 5.4e-24 114.0 72 77.8
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 5.4e-24 114.0 72 79.2
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 5.4e-24 114.0 72 79.2
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 5.4e-24 114.0 72 77.8
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 7.0e-24 113.6 72 77.8
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 7.0e-24 113.6 72 79.2
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 7.0e-24 113.6 72 80.6
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 9.2e-24 113.2 72 76.4
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 9.2e-24 113.2 72 76.4
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 1.2e-23 112.8 78 70.5
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 1.2e-23 112.8 72 77.8
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 1.2e-23 112.8 71 80.3
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 1.2e-23 112.8 71 80.3
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 1.2e-23 112.8 72 76.4
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 1.6e-23 112.5 72 77.8
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.6e-23 112.5 72 76.4
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 1.6e-23 112.5 72 77.8
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 2.7e-23 111.7 72 75.0
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 2.7e-23 111.7 72 75.0
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 2.7e-23 111.7 72 75.0
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 2.7e-23 111.7 72 75.0
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 3.5e-23 111.3 72 77.8
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 4.6e-23 110.9 72 72.2
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 4.6e-23 110.9 72 77.8
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 4.6e-23 110.9 72 77.8
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 5.9e-23 110.5 72 76.4
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 5.9e-23 110.5 72 76.4
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 5.9e-23 110.5 72 75.0
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 5.9e-23 110.5 72 76.4
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 5.9e-23 110.5 73 72.6
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 5.9e-23 110.5 72 75.0
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 7.8e-23 110.2 72 76.4
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 1.0e-22 109.8 72 73.6
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 1.0e-22 109.8 72 73.6
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.0e-22 109.8 72 76.4
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.0e-22 109.8 72 76.4
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.0e-22 109.8 72 76.4
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.3e-22 109.4 72 73.6
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.7e-22 109.0 72 75.0
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 1.7e-22 109.0 72 75.0
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 2.3e-22 108.6 72 73.6
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.0e-22 108.2 72 77.8
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 3.0e-22 108.2 72 72.2
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.9e-22 107.8 72 75.0
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 5.0e-22 107.5 72 73.6
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 6.6e-22 107.1 72 72.2
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 6.6e-22 107.1 72 72.2
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 6.6e-22 107.1 71 74.6
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 8.6e-22 106.7 72 75.0
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 1.1e-21 106.3 72 73.6
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.5e-21 105.9 72 72.2
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.9e-21 105.5 72 75.0
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 2.5e-21 105.1 72 72.2
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 2.5e-21 105.1 72 70.8
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 2.5e-21 105.1 72 72.2
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 4.3e-21 104.4 72 72.2
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 4.3e-21 104.4 72 72.2
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 5.6e-21 104.0 71 73.2
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 7.3e-21 103.6 67 74.6
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 7.3e-21 103.6 72 72.2
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 9.5e-21 103.2 71 73.2
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.2e-20 102.8 71 73.2
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 1.6e-20 102.4 71 71.8
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 2.1e-20 102.1 72 69.4
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 3.6e-20 101.3 71 70.4
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 4.7e-20 100.9 72 70.8
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 6.2e-20 100.5 72 69.4
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 8.0e-20 100.1 71 67.6
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 8.0e-20 100.1 71 69.0
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 1.1e-19 99.8 71 69.0
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 1.4e-19 99.4 71 70.4
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 2.3e-19 98.6 72 70.8
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 2.3e-19 98.6 71 66.2
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 3.1e-19 98.2 71 69.0
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 6.8e-19 97.1 73 67.1
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.9e-19 96.7 72 65.3
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 2.6e-18 95.1 72 68.1
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 5.8e-18 94.0 72 66.7
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 3.7e-17 91.3 74 64.9
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 3.5e-15 84.7 72 65.3
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 2.8e-12 75.1 60 56.7
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.8e-12 75.1 56 62.5
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 1.5e-10 69.3 71 47.9
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.1e-08 63.2 72 51.4
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.1e-08 60.5 58 58.6


User provided reference genes

Program Settings