Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 0.0e+00 1639.4 913 100.0
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 0.0e+00 1270.0 918 78.2
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.5e-295 1018.8 921 65.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.8e-280 969.5 929 64.4
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.0e-280 968.8 923 62.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.3e-279 964.9 899 63.5
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.8e-262 909.1 868 63.6
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.2e-258 895.6 906 60.6
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 1.8e-253 879.8 917 58.3
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 5.3e-253 878.2 919 59.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 6.5e-251 871.3 911 58.7
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.4e-250 870.2 804 63.7
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.6e-249 865.5 831 61.7
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.8e-248 863.2 906 59.4
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 5.9e-244 848.2 920 57.2
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 2.5e-242 842.8 916 57.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 4.2e-242 842.0 871 60.2
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.2e-241 840.5 912 56.9
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.1e-239 833.9 921 57.1
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.5e-239 833.6 843 59.5
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.5e-239 833.6 956 55.3
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.0e-239 833.2 957 55.6
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.4e-237 827.0 961 54.8
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.3e-237 825.1 931 55.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-236 823.9 913 55.4
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 5.9e-236 821.6 905 56.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.0e-235 820.8 895 58.7
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 6.1e-233 811.6 957 55.3
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.4e-232 810.4 906 56.5
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 7.5e-231 804.7 966 54.3
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 9.7e-231 804.3 875 55.2
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.8e-230 802.7 921 55.5
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.7e-230 802.4 976 53.7
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.4e-229 800.4 881 55.8
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 9.1e-229 797.7 924 55.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.0e-227 794.3 893 55.5
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.6e-225 785.8 880 55.3
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.6e-225 785.8 880 55.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 6.1e-225 785.0 922 54.3
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-224 783.9 912 53.3
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.2e-224 781.9 901 54.2
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.2e-223 780.8 939 53.5
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.2e-223 780.8 871 55.3
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.7e-222 776.9 943 53.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 2.2e-222 776.5 901 53.9
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.8e-222 776.2 901 53.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 6.3e-222 775.0 913 53.7
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 6.3e-222 775.0 902 54.7
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.1e-221 772.7 901 53.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.7e-219 766.9 891 53.5
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.9e-219 766.1 903 53.2
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 6.5e-219 765.0 915 52.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 3.3e-218 762.7 977 51.6
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 2.1e-217 760.0 916 54.4
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-216 757.3 902 52.7
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 4.4e-215 752.3 916 52.0
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 3.7e-214 749.2 899 54.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.3e-211 740.0 869 54.0
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 2.3e-211 740.0 983 51.1
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 2.9e-211 739.6 912 51.4
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.3e-210 735.7 778 58.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.0e-208 731.1 908 51.4
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.2e-208 728.8 749 60.6
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.3e-206 724.2 843 53.7
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.7e-206 722.6 918 51.3
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.4e-205 720.7 924 51.7
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.7e-203 713.8 1001 47.6
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.2e-201 707.6 919 50.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.6e-201 706.1 878 51.7
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 6.2e-201 705.3 960 49.6
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 8.0e-201 704.9 868 50.7
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.1e-200 703.0 905 50.8
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 4.4e-199 699.1 918 50.1
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 4.6e-196 689.1 944 49.5
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.5e-194 683.3 934 49.4
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 8.9e-192 674.9 877 51.2
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 5.8e-191 672.2 747 58.2
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 7.5e-191 671.8 895 49.2
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 7.1e-189 665.2 922 48.4
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-188 664.1 830 52.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.3e-187 661.0 906 48.1
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.7e-187 660.6 937 49.8
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 2.3e-187 660.2 882 49.1
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 3.3e-186 656.4 928 47.7
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 7.3e-186 655.2 906 49.1
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.4e-184 650.2 918 47.6
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-181 640.2 933 48.2
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 4.2e-181 639.4 936 47.9
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.4e-176 623.6 942 47.7
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 4.0e-176 622.9 915 46.8
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.2e-175 621.3 898 46.8
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 3.4e-175 619.8 922 46.1
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 4.2e-173 612.8 914 45.0
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.1e-172 610.5 900 45.7
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 3.5e-172 609.8 898 46.2
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 6.6e-171 605.5 928 44.4
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-170 604.4 883 45.5
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.5e-170 604.4 908 47.0
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.9e-170 604.0 882 46.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 3.3e-170 603.2 780 51.4
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.1e-169 600.5 895 45.8
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.8e-169 599.4 484 69.4
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 9.0e-168 595.1 904 47.2
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.5e-167 594.3 924 44.5
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.5e-167 592.8 920 46.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.5e-164 583.2 962 44.2
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 4.3e-162 576.2 911 45.7
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.3e-153 548.1 896 47.0
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 6.2e-153 545.8 900 45.7
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.8e-152 544.3 927 42.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.5e-149 533.9 838 43.3
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 6.7e-139 499.2 536 54.7
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 8.5e-126 455.7 854 40.2
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 3.0e-115 420.6 842 39.3
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 6.7e-115 419.5 627 46.7
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.4e-99 368.6 450 54.4
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.6e-95 355.1 594 41.4
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-92 345.1 523 45.3
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 9.2e-88 329.3 481 44.9
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-86 325.9 414 50.0
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 6.8e-83 313.2 425 50.4
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.1e-80 305.8 399 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.3e-78 298.1 622 35.9
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 7.3e-77 293.1 252 61.1
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.9e-62 244.2 184 70.7
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.6e-55 222.2 550 34.2
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.5e-53 214.9 185 63.8
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.1e-47 195.3 999 25.5
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.9e-45 188.7 182 56.0
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 4.8e-44 184.1 214 52.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.0e-43 181.0 625 32.0
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-40 170.2 175 58.9
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-40 170.2 256 47.7
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.7e-39 168.3 252 47.6
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.9e-32 145.6 236 41.1
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-31 142.5 159 55.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 3.3e-29 134.8 631 23.0
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.2e-28 132.1 149 52.3
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.7e-28 131.3 97 67.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.7e-28 131.3 97 67.0
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-28 131.0 502 28.1
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.8e-27 129.0 280 41.4
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 4.5e-26 124.4 503 28.2
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-25 123.2 383 33.2
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-25 122.5 195 46.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.9e-24 119.0 170 47.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.0e-18 99.0 120 50.8
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-14 86.3 158 36.7
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.8e-14 85.9 65 72.3
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.5e-13 82.8 158 36.1
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.0e-13 82.4 158 36.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.0e-13 82.4 158 36.1
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 4.8e-12 77.8 55 69.1
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 4.8e-12 77.8 55 69.1
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.2e-12 77.0 140 40.0
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.2e-12 77.0 140 40.0
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-11 76.6 85 56.5
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 5.3e-11 74.3 45 77.8
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 7.0e-11 73.9 74 54.1
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-10 72.8 168 33.9
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-10 70.5 97 44.3
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 7.7e-10 70.5 107 47.7
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-08 65.1 50 58.0
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 5.5e-08 64.3 44 68.2
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 2.1e-07 62.4 70 50.0
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.0e-06 60.1 106 40.6


User provided reference genes

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