Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.4e-238 827.8 491 100.0
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.4e-161 572.0 488 77.3
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 3.5e-134 482.6 482 61.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.9e-132 476.9 476 60.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 2.3e-130 469.9 480 61.2
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.0e-129 466.8 477 62.3
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.7e-128 463.8 479 58.9
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 6.4e-128 461.8 475 59.6
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.1e-127 461.1 476 58.4
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.4e-127 459.9 476 58.2
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 9.2e-127 458.0 499 56.5
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.5e-126 456.1 479 63.0
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.3e-124 449.1 476 59.2
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 7.3e-124 448.4 476 59.0
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 9.5e-124 448.0 475 65.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-123 447.6 476 59.0
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.2e-123 447.6 476 58.2
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-123 447.2 476 57.4
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 2.8e-123 446.4 475 57.3
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.1e-123 444.9 480 58.1
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 4.0e-122 442.6 476 57.6
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 8.3e-120 434.9 499 54.7
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-119 434.5 476 55.5
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.6e-118 430.6 480 56.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.6e-118 429.1 475 55.8
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 6.0e-118 428.7 469 58.0
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-117 426.8 483 60.0
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.0e-117 426.4 491 56.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.9e-117 426.0 484 56.4
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.9e-116 423.7 477 57.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.3e-116 422.9 499 55.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.3e-116 422.5 476 53.8
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.6e-115 419.5 479 54.7
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 4.0e-114 416.0 478 61.7
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 9.9e-113 411.4 469 56.3
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 2.4e-111 406.8 479 56.4
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 4.2e-111 406.0 516 50.8
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 7.1e-111 405.2 481 56.3
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.7e-109 400.6 479 60.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.5e-108 397.5 477 53.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 4.3e-108 396.0 481 54.5
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.1e-107 393.7 482 54.1
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 8.1e-107 391.7 475 53.5
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 2.4e-106 390.2 481 54.1
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 3.1e-106 389.8 480 53.5
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.9e-105 384.8 469 54.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.9e-104 383.3 478 52.5
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.8e-104 382.9 479 52.4
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 9.3e-103 378.3 660 43.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.5e-102 376.3 479 59.1
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.5e-100 370.2 477 52.4
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 5.6e-100 369.0 476 55.9
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.8e-99 366.7 444 55.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 3.6e-99 366.3 487 54.8
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 6.2e-99 365.5 481 52.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 2.6e-97 360.1 485 49.9
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 7.6e-97 358.6 480 50.2
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.3e-96 357.8 378 59.3
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.7e-96 357.5 480 50.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 2.2e-96 357.1 350 62.0
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 2.9e-96 356.7 480 50.8
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 3.8e-96 356.3 536 46.1
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.4e-95 354.4 479 51.8
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 4.2e-95 352.8 479 48.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.6e-94 350.9 478 50.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 2.1e-94 350.5 487 49.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.5e-92 344.4 523 46.3
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-92 344.4 476 48.9
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.5e-92 344.4 482 49.4
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.5e-92 344.4 476 48.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.5e-92 343.6 475 49.7
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.5e-92 343.6 479 55.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 3.3e-92 343.2 474 49.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.3e-92 343.2 478 50.0
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 4.3e-92 342.8 331 60.4
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 7.4e-92 342.0 475 48.4
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 9.6e-92 341.7 331 60.4
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.4e-90 337.8 482 47.9
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.4e-89 333.2 475 48.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.5e-87 327.0 461 54.4
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 7.1e-87 325.5 478 46.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 6.0e-86 322.4 477 46.1
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.1e-85 319.3 473 47.4
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.1e-85 319.3 473 47.4
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 8.7e-85 318.5 482 53.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 7.4e-84 315.5 469 46.9
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 9.6e-84 315.1 478 51.0
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 3.7e-83 313.2 276 65.6
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 4.1e-82 309.7 479 52.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 6.9e-82 308.9 478 52.7
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 5.8e-81 305.8 472 45.8
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.1e-79 301.6 478 53.6
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.9e-79 300.8 477 45.7
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 5.5e-79 299.3 502 52.4
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.1e-78 297.4 475 45.5
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 8.7e-77 292.0 467 51.8
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-76 291.6 462 45.2
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.5e-76 290.4 492 42.7
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.3e-75 285.8 467 44.3
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 4.1e-74 283.1 302 67.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.0e-69 268.5 376 48.4
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.5e-68 264.6 478 42.3
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 4.3e-68 263.1 293 53.9
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.4e-66 258.1 313 58.8
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.7e-62 243.0 500 46.0
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 4.4e-60 236.5 228 68.9
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.3e-59 232.6 310 61.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.2e-56 224.2 259 54.8
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-46 191.8 265 45.3
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.6e-41 174.9 517 32.5
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.2e-39 167.2 195 54.9
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 2.6e-36 157.5 296 38.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.2e-33 148.7 290 40.7
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.8e-29 134.8 301 39.5
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.2e-26 124.0 166 65.1
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.5e-23 115.2 202 42.6
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.9e-23 114.8 202 42.6
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.0e-21 109.0 195 59.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.2e-21 106.7 164 45.1
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 9.8e-20 102.4 63 81.0
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.3e-19 102.1 330 34.2
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.4e-18 96.7 155 64.5
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.5e-15 88.6 159 61.0
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.4e-13 82.0 62 66.1
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.5e-12 78.6 62 64.5
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.4e-10 71.2 50 70.0
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.3e-07 60.5 201 30.3
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.6e-06 57.4 339 27.7
Cfa026984 Carpinus fangiana HOM05D005934 ORTHO05D005165 4.7e-06 57.0 174 28.2


User provided reference genes

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