Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 7.9e-46 186.8 98 100.0
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.9e-39 165.6 93 92.5
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 8.0e-14 80.5 76 60.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 5.2e-13 77.8 85 54.1
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 4.4e-12 74.7 104 44.2
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 9.8e-12 73.6 76 56.6
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.7e-11 72.8 92 46.7
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 1.7e-11 72.8 88 50.0
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 2.8e-11 72.0 86 51.2
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.7e-11 71.6 79 53.2
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 4.8e-11 71.2 83 53.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.1e-10 70.1 77 51.9
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.4e-10 69.7 69 56.5
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.8e-10 69.3 75 53.3
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 1.8e-10 69.3 75 53.3
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 3.1e-10 68.6 76 50.0
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 4.1e-10 68.2 86 47.7
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 7.0e-10 67.4 69 58.0
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 7.0e-10 67.4 68 51.5
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 7.0e-10 67.4 75 53.3
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 1.2e-09 66.6 86 47.7
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 1.6e-09 66.2 73 52.1
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.6e-09 66.2 81 53.1
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.6e-09 66.2 81 49.4
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.0e-09 65.9 78 48.7
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 3.5e-09 65.1 77 50.6
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 4.5e-09 64.7 73 52.1
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.5e-09 64.7 41 75.6
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 5.9e-09 64.3 67 55.2
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 5.9e-09 64.3 68 52.9
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 5.9e-09 64.3 68 51.5
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 7.7e-09 63.9 81 46.9
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 7.7e-09 63.9 73 49.3
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.0e-08 63.5 84 48.8
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 1.0e-08 63.5 67 61.2
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.3e-08 63.2 93 43.0
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.3e-08 63.2 66 56.1
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.3e-08 63.2 81 50.6
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.2e-08 62.4 68 54.4
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.8e-08 61.6 69 55.1
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 5.0e-08 61.2 70 54.3
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 6.5e-08 60.8 83 45.8
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 6.5e-08 60.8 83 45.8
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 6.5e-08 60.8 83 45.8
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 6.5e-08 60.8 83 45.8
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 6.5e-08 60.8 83 45.8
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 6.5e-08 60.8 86 43.0
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 6.5e-08 60.8 86 43.0
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 6.5e-08 60.8 68 54.4
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.5e-08 60.5 42 69.0
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 8.5e-08 60.5 42 69.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 8.5e-08 60.5 73 47.9
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 8.5e-08 60.5 81 42.0
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 8.5e-08 60.5 78 50.0
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 8.5e-08 60.5 83 44.6
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.1e-07 60.1 90 44.4
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.5e-07 59.7 66 59.1
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 1.5e-07 59.7 80 43.8
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 1.9e-07 59.3 82 47.6
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.9e-07 59.3 84 47.6
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.5e-07 58.9 66 50.0
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 2.5e-07 58.9 50 54.0
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 2.5e-07 58.9 74 50.0
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 3.2e-07 58.5 50 54.0
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 3.2e-07 58.5 81 49.4
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 4.2e-07 58.2 75 46.7
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 4.2e-07 58.2 60 51.7
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 5.5e-07 57.8 83 44.6
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 5.5e-07 57.8 66 50.0
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 5.5e-07 57.8 62 50.0
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 7.2e-07 57.4 88 42.0
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 7.2e-07 57.4 41 61.0
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 9.4e-07 57.0 78 47.4
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 9.4e-07 57.0 45 64.4
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 1.2e-06 56.6 60 50.0
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 1.2e-06 56.6 60 50.0
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 1.2e-06 56.6 41 58.5
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 1.6e-06 56.2 39 64.1
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.6e-06 56.2 64 46.9
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.6e-06 56.2 44 63.6
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 1.6e-06 56.2 75 49.3
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 2.1e-06 55.8 66 48.5
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 2.1e-06 55.8 41 58.5
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.1e-06 55.8 73 49.3
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 2.7e-06 55.5 67 50.7
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.6e-06 55.1 60 50.0
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.6e-06 55.1 60 50.0
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 3.6e-06 55.1 52 53.8
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 4.7e-06 54.7 49 59.2
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 6.1e-06 54.3 70 47.1
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 6.1e-06 54.3 60 48.3
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 6.1e-06 54.3 69 47.8
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 8.0e-06 53.9 74 45.9


User provided reference genes

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