Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.5e-170 602.1 311 100.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.7e-116 422.5 317 70.0
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 7.4e-114 414.5 252 84.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.5e-111 405.2 307 70.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.9e-110 402.5 307 71.0
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 7.2e-109 397.9 271 77.1
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 7.2e-109 397.9 318 67.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 9.4e-109 397.5 321 67.0
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 9.7e-106 387.5 313 67.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 9.7e-106 387.5 299 68.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 8.2e-105 384.4 291 70.1
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 3.1e-104 382.5 295 70.5
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.5e-103 378.6 286 69.6
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 7.7e-103 377.9 313 64.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.7e-103 377.9 313 66.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.9e-102 375.9 316 66.1
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 5.0e-102 375.2 318 65.7
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.4e-101 373.6 284 69.0
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.4e-101 373.6 313 65.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.5e-101 372.9 278 70.1
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 2.5e-101 372.9 267 73.4
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.5e-101 372.9 298 67.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 2.5e-101 372.9 284 69.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 4.2e-101 372.1 257 73.5
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.2e-100 370.5 300 69.3
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.1e-100 369.8 296 68.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.7e-100 369.4 285 68.8
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 7.9e-100 367.9 297 66.0
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 7.9e-100 367.9 303 67.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.4e-99 367.1 255 75.3
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.3e-99 366.3 294 66.7
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.0e-99 365.9 312 65.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.0e-99 365.9 312 65.4
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.9e-99 365.5 294 66.3
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 3.9e-99 365.5 294 66.3
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.9e-99 365.5 313 66.5
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 6.7e-99 364.8 295 65.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.5e-98 363.6 286 67.5
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.0e-98 363.2 298 67.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.6e-98 362.8 298 67.4
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 5.7e-98 361.7 315 63.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.3e-97 360.5 255 74.1
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 4.8e-97 358.6 302 65.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 4.8e-97 358.6 292 67.5
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.4e-96 356.3 307 65.5
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.1e-96 355.5 309 64.1
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.3e-96 355.1 315 61.9
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 7.0e-96 354.8 294 65.3
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.0e-95 353.2 255 71.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.0e-95 353.2 297 64.6
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.5e-95 352.4 313 63.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.5e-95 352.1 254 71.7
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.5e-95 352.1 254 72.0
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 5.9e-95 351.7 313 63.3
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.3e-94 350.5 286 66.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 8.5e-94 347.8 255 72.5
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.1e-93 347.4 292 65.1
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.5e-93 347.1 253 71.1
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.9e-93 346.7 299 66.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.5e-93 346.3 313 62.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.5e-93 346.3 252 69.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.2e-93 345.9 313 60.4
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 3.2e-93 345.9 302 63.2
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 4.2e-93 345.5 255 69.8
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.2e-93 345.5 269 68.4
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 7.2e-93 344.7 294 65.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 7.2e-93 344.7 263 66.9
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 4.7e-92 342.0 312 61.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 4.7e-92 342.0 312 61.5
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 4.7e-92 342.0 313 60.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.7e-92 342.0 260 68.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.7e-92 342.0 307 62.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 6.1e-92 341.7 296 64.2
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 8.0e-92 341.3 296 63.9
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 8.0e-92 341.3 297 64.3
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 8.0e-92 341.3 267 68.5
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.4e-91 340.5 304 61.2
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.4e-91 340.5 236 73.3
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.3e-91 339.7 267 68.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 3.9e-91 339.0 312 61.2
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 6.7e-91 338.2 306 61.8
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 6.7e-91 338.2 279 64.2
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.5e-90 337.0 306 62.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 2.6e-90 336.3 296 61.8
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 5.7e-90 335.1 321 58.6
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.7e-89 333.6 299 63.9
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 3.7e-89 332.4 304 60.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.7e-89 332.4 255 65.5
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 4.8e-89 332.0 264 62.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.1e-88 330.9 236 70.8
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.1e-88 327.8 254 65.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 9.1e-88 327.8 255 65.5
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.6e-87 326.2 287 63.4
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 4.5e-87 325.5 371 52.6
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 5.9e-87 325.1 226 75.7
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 5.9e-87 325.1 338 53.6
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.0e-86 324.3 256 65.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.0e-86 324.3 294 60.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.3e-86 323.9 256 65.2
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.3e-86 323.9 306 59.8
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.9e-86 322.8 291 59.8
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 5.0e-86 322.0 236 68.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.5e-86 321.6 256 64.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.5e-86 321.6 256 64.8
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-85 320.9 314 59.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.5e-85 320.5 286 60.8
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.5e-85 320.5 257 65.8
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.9e-85 320.1 298 58.4
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-85 318.9 256 64.5
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.3e-83 313.2 294 59.2
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.0e-83 312.4 256 63.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.6e-82 309.7 256 62.5
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.4e-82 308.9 309 57.0
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 9.7e-82 307.8 253 66.4
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 6.3e-81 305.1 274 62.8
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 8.3e-81 304.7 313 56.2
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.4e-80 303.1 247 63.6
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.4e-80 303.1 296 59.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.1e-80 302.4 252 62.3
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.2e-79 300.8 282 60.3
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.7e-79 299.7 314 53.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.1e-77 294.3 293 56.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.1e-77 294.3 240 62.9
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.0e-76 288.1 353 50.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.4e-75 287.3 240 62.5
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.8e-75 285.0 356 50.0
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-73 280.4 227 65.6
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.4e-72 277.3 395 44.3
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 9.1e-72 274.6 256 62.9
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 9.1e-72 274.6 255 55.3
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.7e-71 273.1 282 53.5
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 7.0e-64 248.4 173 70.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.1e-60 236.9 220 57.7
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.1e-59 233.0 308 44.2
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 9.8e-58 228.0 221 58.8
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.3e-57 227.6 296 45.3
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.4e-56 224.2 455 37.1
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.3e-54 217.6 197 62.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.3e-54 216.9 236 47.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 9.5e-53 211.5 225 52.4
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.4e-48 196.8 251 45.0
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.2e-48 196.4 309 43.0
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 9.2e-48 194.9 135 71.1
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 4.6e-47 192.6 143 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 3.6e-44 183.0 189 52.4
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.8e-36 156.8 124 65.3
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.3e-28 131.3 186 46.2
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 1.1e-21 108.2 95 52.6
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.6e-20 104.4 90 63.3
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.3e-17 94.7 79 59.5
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.3e-14 84.0 70 64.3
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 5.1e-14 82.8 79 50.6
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.9e-13 80.9 244 32.4
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.2e-10 71.6 52 69.2
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.5e-10 71.2 49 75.5
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 3.4e-10 70.1 70 42.9
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 6.5e-09 65.9 92 52.2
TAR623G1365 Trochodendron aralioides HOM05D004474 ORTHO05D414940 1.6e-07 61.2 47 70.2
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 6.0e-07 59.3 144 31.2
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 2.3e-06 57.4 70 55.7
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 5.1e-06 56.2 103 33.0


User provided reference genes

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