Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.5e-158 562.8 284 100.0
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 7.9e-131 470.7 287 82.9
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.0e-129 466.1 286 80.8
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.0e-126 456.1 286 80.8
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.9e-124 449.5 287 80.5
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 3.2e-124 448.7 286 78.7
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.3e-120 436.8 286 80.1
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.8e-120 435.6 284 76.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.2e-118 430.3 284 75.7
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 5.9e-118 427.9 285 75.8
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 5.9e-118 427.9 284 75.4
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 5.0e-117 424.9 288 74.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.1e-116 423.7 288 74.3
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.2e-116 422.2 288 75.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.2e-116 422.2 288 74.0
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 5.5e-116 421.4 288 72.9
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 9.4e-116 420.6 284 73.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 2.7e-115 419.1 286 73.4
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 4.7e-115 418.3 286 73.1
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 4.7e-115 418.3 288 73.3
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.4e-114 416.8 288 73.3
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.0e-114 415.6 286 72.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.0e-114 415.2 286 72.7
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 2.8e-112 409.1 284 73.2
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 8.3e-112 407.5 288 71.5
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.4e-111 406.8 296 71.3
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.0e-110 402.9 254 79.9
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.0e-110 402.9 285 70.2
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.5e-110 401.7 254 79.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.5e-110 401.7 286 69.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 7.7e-110 401.0 296 69.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 8.5e-109 397.5 285 70.5
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.5e-108 396.7 256 76.2
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.5e-108 396.7 285 69.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 3.2e-108 395.6 284 71.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.2e-108 394.4 295 69.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.2e-107 393.7 283 68.9
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.1e-107 392.9 287 72.1
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 2.7e-107 392.5 284 69.7
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 4.7e-107 391.7 286 68.5
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 4.7e-107 391.7 285 68.8
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.0e-107 391.0 256 76.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 8.0e-107 391.0 297 69.7
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 8.0e-107 391.0 252 75.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.0e-106 390.6 286 69.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.0e-106 388.7 265 71.7
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 5.2e-106 388.3 288 68.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 3.4e-105 385.6 291 71.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.2e-104 382.9 286 68.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 2.8e-104 382.5 285 68.8
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.9e-104 381.7 284 67.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.8e-103 379.8 286 66.8
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 3.1e-103 379.0 286 68.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.5e-102 375.2 253 73.5
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 7.7e-102 374.4 255 73.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.3e-101 373.6 274 69.7
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-101 373.6 283 66.8
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 8.6e-101 370.9 273 70.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.5e-100 370.2 283 66.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.9e-100 369.8 240 76.2
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.5e-100 369.4 291 66.0
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.3e-100 369.0 297 65.0
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.3e-100 369.0 286 66.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.6e-99 366.7 286 66.8
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.8e-99 365.9 240 74.6
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 3.6e-99 365.5 253 71.9
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 4.7e-99 365.2 284 66.5
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.4e-98 363.6 286 65.7
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.8e-98 363.2 221 79.6
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.3e-98 362.8 253 70.4
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 8.9e-98 360.9 254 72.8
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 8.9e-98 360.9 253 70.0
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.5e-97 360.1 286 65.0
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 7.5e-97 357.8 285 66.0
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.2e-96 356.3 287 64.8
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 4.9e-96 355.1 287 64.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-95 353.6 287 63.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.4e-95 353.6 287 63.8
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.8e-95 353.2 294 63.3
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.8e-95 353.2 287 64.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.0e-94 349.7 285 64.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.0e-94 349.7 286 64.0
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.5e-94 349.0 263 66.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 7.8e-94 347.8 289 65.1
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.0e-93 347.4 256 67.6
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.7e-93 346.7 282 64.2
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.7e-93 346.7 266 66.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.0e-93 345.9 220 77.3
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.9e-93 345.5 290 64.8
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 2.3e-90 336.3 309 59.2
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 3.4e-89 332.4 237 72.2
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 7.5e-89 331.3 294 60.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 4.9e-88 328.6 265 61.1
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 5.4e-87 325.1 241 65.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-86 323.6 266 63.5
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 6.0e-86 321.6 241 68.0
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-84 317.4 242 66.5
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.9e-84 316.6 245 66.1
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 2.3e-82 309.7 243 66.3
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 9.2e-79 297.7 183 78.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 5.1e-77 292.0 328 51.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.6e-75 285.8 222 60.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 6.2e-75 285.0 231 58.4
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.2e-73 280.8 261 55.9
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.4e-71 273.9 175 76.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.1e-70 270.0 173 75.7
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.9e-68 263.5 228 56.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.6e-67 260.4 230 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.5e-65 253.8 240 52.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.3e-60 235.7 263 50.2
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 4.3e-60 235.7 290 46.9
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 3.6e-59 232.6 247 49.0
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.8e-58 230.3 186 58.6
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.4e-58 229.9 227 59.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-55 221.1 236 55.5
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.3e-53 213.4 167 65.3
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 4.8e-51 205.7 112 89.3
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.2e-39 166.4 130 66.2
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.8e-37 160.6 224 41.5
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 2.0e-33 147.1 109 64.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.1e-30 137.1 192 40.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 3.6e-30 136.3 133 52.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.3e-29 133.7 74 83.8
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 3.1e-26 123.2 81 67.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 3.1e-26 123.2 81 66.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-25 120.2 81 66.7
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.5e-23 113.6 82 65.9
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.1e-18 96.3 169 34.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 7.7e-17 92.0 80 62.5
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.3e-16 91.3 197 31.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 6.5e-16 89.0 100 50.0
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 6.5e-16 89.0 105 49.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.5e-16 88.6 100 49.0
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.5e-16 88.6 100 49.0
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-15 87.8 100 49.0
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 2.5e-15 87.0 99 49.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.2e-15 86.7 100 48.0
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 9.4e-15 85.1 128 43.0
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-13 81.3 52 75.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.6e-12 77.0 64 65.6
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.4e-10 71.2 60 60.0
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 1.7e-08 64.3 210 26.2


User provided reference genes

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