Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 4.9e-54 214.2 103 100.0
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 8.4e-14 80.5 44 79.5
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.1e-13 80.1 49 71.4
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 7.1e-13 77.4 48 70.8
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 1.2e-12 76.6 68 57.4
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 4.6e-12 74.7 55 65.5
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 6.0e-12 74.3 63 55.6
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 6.0e-12 74.3 60 60.0
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 7.8e-12 73.9 68 60.3
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 7.8e-12 73.9 64 57.8
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 7.8e-12 73.9 38 84.2
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 7.8e-12 73.9 38 84.2
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 1.0e-11 73.6 37 89.2
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 1.3e-11 73.2 37 86.5
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 1.3e-11 73.2 37 86.5
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.3e-11 73.2 64 56.2
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 1.7e-11 72.8 59 59.3
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.7e-11 72.8 37 86.5
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 2.3e-11 72.4 34 91.2
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.3e-11 72.4 34 91.2
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.3e-11 72.4 34 91.2
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.3e-11 72.4 34 91.2
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.3e-11 72.4 55 63.6
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 2.3e-11 72.4 55 61.8
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.0e-11 72.0 37 83.8
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.0e-11 72.0 37 83.8
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.0e-11 72.0 38 78.9
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.0e-11 72.0 38 78.9
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 3.0e-11 72.0 38 78.9
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.0e-11 72.0 37 83.8
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 3.9e-11 71.6 75 53.3
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 88.2
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 88.2
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 3.9e-11 71.6 38 78.9
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 88.2
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 88.2
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 3.9e-11 71.6 39 79.5
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 3.9e-11 71.6 38 78.9
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 88.2
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 3.9e-11 71.6 47 68.1
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 3.9e-11 71.6 34 91.2
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 5.1e-11 71.2 38 76.3
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 5.1e-11 71.2 38 76.3
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 5.1e-11 71.2 33 90.9
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 5.1e-11 71.2 38 76.3
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 6.6e-11 70.9 34 91.2
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 6.6e-11 70.9 37 86.5
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 6.6e-11 70.9 34 91.2
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 6.6e-11 70.9 37 81.1
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 6.6e-11 70.9 37 81.1
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 8.7e-11 70.5 57 61.4
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 8.7e-11 70.5 57 61.4
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 8.7e-11 70.5 57 61.4
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 8.7e-11 70.5 34 85.3
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 8.7e-11 70.5 67 50.7
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 1.1e-10 70.1 34 88.2
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 1.1e-10 70.1 34 88.2
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 1.1e-10 70.1 33 90.9
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.1e-10 70.1 34 88.2
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 1.5e-10 69.7 60 58.3
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 1.5e-10 69.7 38 73.7
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.5e-10 69.7 37 78.4
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 1.5e-10 69.7 31 93.5
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.5e-10 69.7 34 85.3
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 1.5e-10 69.7 34 85.3
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.5e-10 69.7 34 88.2
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.9e-10 69.3 41 75.6
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 2.5e-10 68.9 37 78.4
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.5e-10 68.9 37 81.1
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 3.3e-10 68.6 34 85.3
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 3.3e-10 68.6 34 85.3
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 3.3e-10 68.6 70 50.0
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 4.3e-10 68.2 34 85.3
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 4.3e-10 68.2 37 81.1
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 5.6e-10 67.8 34 82.4
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 5.6e-10 67.8 57 56.1
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 9.6e-10 67.0 37 75.7
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 9.6e-10 67.0 75 49.3
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 9.6e-10 67.0 65 58.5
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 9.6e-10 67.0 55 60.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 1.3e-09 66.6 40 75.0
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.3e-09 66.6 53 58.5
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 1.3e-09 66.6 75 49.3
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 4.8e-09 64.7 37 78.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 4.8e-09 64.7 37 78.4
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 4.8e-09 64.7 34 79.4
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 4.8e-09 64.7 77 48.1
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 8.1e-09 63.9 33 81.8
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 8.1e-09 63.9 64 53.1
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 1.4e-08 63.2 34 76.5
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 3.1e-08 62.0 61 47.5
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 9.0e-08 60.5 33 81.8
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.2e-07 60.1 40 67.5
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 1.2e-07 60.1 55 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 2.0e-07 59.3 47 55.3
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 7.6e-07 57.4 31 77.4
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.2e-06 55.8 56 51.8
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 8.4e-06 53.9 43 55.8


User provided reference genes

Program Settings