Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-69 266.2 143 100.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.2e-46 188.0 123 81.3
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.6e-45 185.7 123 80.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.0e-42 176.0 125 77.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.9e-40 169.5 144 66.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 8.0e-39 164.1 124 72.6
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 6.8e-38 161.0 123 73.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.2e-37 160.2 123 72.4
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.4e-37 158.7 129 70.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.2e-36 156.0 120 72.5
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.2e-36 156.0 120 72.5
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.8e-36 155.6 123 69.9
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.8e-36 155.6 121 71.1
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.7e-36 155.2 124 71.0
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 4.9e-36 154.8 123 69.1
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 6.3e-36 154.5 140 64.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 6.3e-36 154.5 121 71.1
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.1e-35 153.7 120 70.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.1e-35 153.7 123 68.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 5.4e-35 151.4 123 65.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 7.0e-35 151.0 121 68.6
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.2e-35 150.6 122 67.2
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.6e-34 149.8 121 69.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 3.5e-34 148.7 123 66.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.8e-34 147.5 120 67.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 7.8e-34 147.5 120 68.3
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.7e-33 146.4 125 67.2
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.7e-33 146.4 121 67.8
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.3e-33 146.0 127 66.1
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.3e-33 146.0 124 71.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.3e-33 146.0 123 67.5
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.9e-33 145.6 125 67.2
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.8e-33 145.2 139 56.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 5.0e-33 144.8 121 63.6
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 6.6e-33 144.4 120 69.2
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 6.6e-33 144.4 122 66.4
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-32 143.7 122 65.6
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.5e-32 143.3 139 55.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.5e-32 143.3 128 65.6
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.5e-32 143.3 120 66.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.9e-32 142.9 124 70.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.9e-32 142.9 117 67.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.5e-32 142.5 115 67.0
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.5e-32 142.5 115 67.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 4.3e-32 141.7 121 66.9
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 9.5e-32 140.6 125 63.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-31 140.2 121 64.5
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.1e-31 139.4 103 72.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.6e-31 138.7 127 60.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 3.6e-31 138.7 123 64.2
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.7e-31 138.3 120 65.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.7e-31 138.3 120 65.8
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 8.0e-31 137.5 121 64.5
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 8.0e-31 137.5 125 65.6
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-30 137.1 124 61.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-30 137.1 124 61.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-30 136.7 153 52.9
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.0e-30 135.6 153 52.3
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 3.0e-30 135.6 128 64.8
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.0e-30 135.2 121 64.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 4.0e-30 135.2 132 62.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.2e-30 134.8 121 61.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.2e-30 134.8 121 61.2
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.5e-29 133.3 124 58.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-29 132.9 121 63.6
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-29 132.5 121 63.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 2.6e-29 132.5 127 63.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 3.4e-29 132.1 121 64.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 5.8e-29 131.3 117 67.5
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 5.8e-29 131.3 117 67.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 7.5e-29 131.0 145 55.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.3e-28 130.2 106 68.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.7e-28 129.8 124 62.1
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.7e-28 129.8 121 62.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.9e-28 128.3 124 62.9
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 8.3e-28 127.5 141 56.7
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.1e-27 127.1 117 62.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.4e-27 126.7 124 60.5
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-27 126.7 117 63.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.4e-27 126.7 120 57.5
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.2e-27 125.6 108 63.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 7.0e-27 124.4 126 58.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.2e-26 123.6 122 57.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.6e-26 123.2 111 64.0
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 6.0e-26 121.3 110 63.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 7.8e-26 120.9 123 58.5
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.0e-25 120.6 126 56.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.0e-25 120.6 120 57.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.3e-25 119.4 114 61.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 8.6e-25 117.5 121 57.0
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-24 116.7 121 57.9
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 3.3e-24 115.5 146 55.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 3.3e-24 115.5 120 56.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 4.3e-24 115.2 103 65.0
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.8e-23 112.5 129 52.7
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.7e-23 111.7 120 54.2
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 6.2e-23 111.3 117 49.6
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 6.2e-23 111.3 105 61.9
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.1e-22 109.0 122 50.0
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 3.1e-22 109.0 122 59.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.0e-22 108.6 118 56.8
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 6.8e-22 107.8 122 52.5
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 6.8e-22 107.8 120 51.7
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 8.9e-22 107.5 121 55.4
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.2e-21 107.1 121 51.2
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.2e-21 107.1 127 52.0
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.5e-21 106.7 121 52.9
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.8e-21 104.0 126 50.0
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-20 103.2 120 51.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.7e-20 102.1 123 51.2
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 4.9e-20 101.7 123 50.4
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.9e-19 99.8 121 49.6
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.4e-19 99.4 121 47.1
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.4e-19 99.4 123 51.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.2e-19 99.0 117 53.0
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 9.2e-19 97.4 135 45.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 9.2e-19 97.4 116 51.7
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.6e-18 95.1 124 46.8
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.3e-17 93.6 140 45.0
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 8.6e-17 90.9 124 46.0
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.1e-16 90.5 126 49.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-16 89.0 127 44.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 7.3e-16 87.8 121 46.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.6e-15 86.7 139 44.6
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.8e-15 85.9 121 45.5
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 4.7e-15 85.1 129 41.9
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.7e-15 85.1 117 46.2
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.7e-15 85.1 117 46.2
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.7e-15 85.1 117 46.2
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.8e-14 83.2 119 44.5
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-14 82.4 144 43.8
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.5e-13 80.1 71 64.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.6e-13 79.3 136 44.1
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.4e-13 79.0 123 44.7
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 4.4e-13 78.6 118 44.9
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.3e-12 77.0 117 47.0
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 9.2e-11 70.9 74 63.5
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.5e-08 60.8 42 64.3
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.8e-07 59.3 65 52.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.8e-06 56.6 63 52.4


User provided reference genes

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