Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.7e-310 1067.0 534 100.0
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.1e-229 798.1 511 77.9
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 5.0e-219 764.6 524 74.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 8.5e-219 763.8 509 75.6
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.5e-218 762.3 517 75.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.2e-218 761.9 509 75.2
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 3.6e-217 758.4 512 75.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 5.7e-215 751.1 514 74.3
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.1e-213 746.9 512 74.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.1e-213 745.0 507 74.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 9.1e-213 743.8 509 71.9
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 9.1e-213 743.8 512 72.9
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.5e-210 734.6 514 73.7
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 5.5e-210 734.6 510 72.4
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.2e-209 733.4 512 72.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.1e-209 732.6 510 73.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.4e-207 725.3 510 72.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.3e-206 723.4 513 71.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-206 723.0 510 71.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 4.1e-205 718.4 511 71.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.4e-205 718.0 512 70.3
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.2e-204 716.8 511 70.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.7e-204 715.7 518 70.8
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.7e-204 715.7 506 71.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 7.8e-204 714.1 512 72.5
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.8e-204 714.1 510 71.4
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.0e-203 713.8 512 69.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.3e-202 708.8 512 71.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.8e-201 705.7 508 70.5
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.0e-200 701.8 535 68.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 6.8e-200 701.0 515 68.9
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.2e-199 700.3 594 63.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.8e-199 697.2 511 69.5
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-198 695.7 511 69.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 4.9e-198 694.9 509 69.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 8.3e-198 694.1 511 68.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.3e-198 694.1 511 68.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.8e-197 693.0 513 70.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.2e-197 692.2 510 69.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.2e-197 692.2 509 71.5
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 7.0e-197 691.0 511 69.9
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-196 690.3 512 69.3
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.0e-196 689.5 576 63.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 7.8e-196 687.6 510 68.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.0e-195 687.2 509 68.4
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-195 685.6 509 69.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-195 685.6 509 69.0
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.5e-194 683.3 510 66.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.9e-194 682.9 510 67.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.3e-194 681.8 510 67.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.2e-193 680.2 509 67.6
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 6.2e-193 677.9 509 67.0
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.2e-193 677.9 510 66.7
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.0e-193 677.6 510 66.3
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 8.0e-193 677.6 517 67.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.3e-192 676.0 509 66.6
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.0e-192 675.2 525 65.9
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.6e-191 672.5 507 66.3
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 7.5e-191 671.0 510 65.9
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 7.5e-191 671.0 510 67.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.9e-190 669.1 509 67.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 3.7e-190 668.7 510 67.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.4e-190 667.9 513 66.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.1e-189 667.2 534 63.9
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.9e-189 666.4 509 67.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.4e-189 666.0 513 66.5
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.4e-189 666.0 504 67.1
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.4e-189 664.8 513 65.7
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 7.0e-189 664.5 517 65.4
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.1e-188 662.9 512 66.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.1e-188 662.9 512 65.4
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.1e-188 662.9 511 67.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 3.5e-188 662.1 512 65.4
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 4.6e-188 661.8 506 66.6
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.8e-188 661.0 512 65.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 7.8e-188 661.0 512 65.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.3e-187 659.4 515 66.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.3e-187 659.4 505 65.9
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 8.6e-187 657.5 507 65.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.2e-185 653.7 510 64.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.6e-185 653.3 519 64.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.4e-184 650.2 462 69.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-184 649.8 549 62.7
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.5e-183 646.7 511 64.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.5e-183 646.7 492 68.5
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.4e-183 645.6 509 65.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.7e-182 643.3 512 63.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.2e-182 642.9 510 64.3
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-181 638.6 440 74.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 7.8e-180 634.4 479 66.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.3e-179 632.9 560 61.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.1e-178 630.6 508 63.4
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.9e-178 629.8 508 63.8
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 7.3e-178 627.9 508 63.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.0e-175 619.8 433 71.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.4e-175 619.0 496 63.5
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 5.8e-175 618.2 432 69.7
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.4e-173 612.8 521 60.7
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.3e-170 601.3 461 65.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.0e-168 595.5 553 57.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.2e-166 589.7 426 69.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.1e-164 583.2 379 77.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.9e-163 578.9 413 69.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 7.3e-162 574.7 355 81.4
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 7.1e-157 558.1 461 61.8
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 8.7e-155 551.2 515 55.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-151 540.8 372 73.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-149 533.5 416 67.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.6e-145 520.4 537 53.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 5.7e-138 495.4 384 65.6
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.2e-134 483.4 448 56.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.7e-121 439.5 534 46.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-118 429.9 368 60.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-115 421.0 392 60.7
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.7e-113 412.9 450 50.0
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.4e-112 410.2 437 50.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-111 407.5 508 46.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-106 391.3 276 68.8
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-97 360.5 328 60.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.9e-80 304.3 686 34.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.6e-74 283.9 506 36.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.1e-71 274.2 459 38.1
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.9e-69 267.7 508 38.4
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.9e-64 251.1 242 56.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 8.4e-57 225.7 224 54.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 8.4e-57 225.7 367 37.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-54 218.0 158 72.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.1e-51 207.2 471 31.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.9e-40 171.4 212 42.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 6.2e-36 156.4 247 39.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.9e-35 152.9 102 74.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-33 148.3 92 79.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 4.9e-33 146.7 122 68.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.6e-23 113.6 346 27.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 7.9e-23 112.8 109 61.5
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.4e-13 79.7 74 62.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 8.2e-12 76.3 49 79.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 2.6e-10 71.2 48 66.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 8.5e-09 66.2 64 60.9
MCO04G264 Micromonas commoda HOM05D002878 ORTHO05D014171 1.4e-08 65.5 446 23.5
GSVIVG01038155001 Vitis vinifera HOM05D000263 ORTHO05D003675 3.6e-07 60.8 60 53.3
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 3.9e-06 57.4 228 27.6


User provided reference genes

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