Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.9e-37 157.9 72 100.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.8e-34 148.7 72 93.1
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.6e-24 115.5 74 71.6
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.4e-23 112.5 65 73.8
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 5.8e-22 107.1 59 79.7
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 2.2e-21 105.1 67 64.2
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 9.3e-20 99.8 63 68.3
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 4.6e-19 97.4 70 60.0
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 4.6e-19 97.4 70 60.0
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 6.1e-19 97.1 73 64.4
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 1.8e-18 95.5 72 61.1
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.0e-18 94.7 69 59.4
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 5.1e-18 94.0 59 71.2
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 6.7e-18 93.6 70 58.6
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 8.7e-18 93.2 72 59.7
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.5e-17 92.4 63 65.1
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 1.9e-17 92.0 65 60.0
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 2.5e-17 91.7 59 66.1
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 2.5e-17 91.7 63 63.5
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 3.3e-17 91.3 63 61.9
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 4.3e-17 90.9 63 63.5
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 4.3e-17 90.9 69 60.9
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 5.7e-17 90.5 68 61.8
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 1.3e-16 89.4 74 55.4
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 2.2e-16 88.6 63 60.3
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 3.7e-16 87.8 65 55.4
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.7e-16 87.8 64 60.9
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 8.2e-16 86.7 63 61.9
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 8.2e-16 86.7 65 63.1
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 1.1e-15 86.3 62 62.9
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 1.4e-15 85.9 72 55.6
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.4e-15 85.9 74 58.1
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 3.1e-15 84.7 63 60.3
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 4.1e-15 84.3 62 61.3
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 5.3e-15 84.0 61 60.7
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 6.9e-15 83.6 63 60.3
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 6.9e-15 83.6 63 60.3
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 9.0e-15 83.2 70 54.3
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 9.0e-15 83.2 73 56.2
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 1.2e-14 82.8 65 61.5
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.5e-14 82.4 61 60.7
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.5e-14 82.4 61 60.7
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.0e-14 82.0 66 54.5
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.0e-14 82.0 63 58.7
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 2.6e-14 81.6 68 58.8
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 3.4e-14 81.3 64 56.2
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 3.4e-14 81.3 63 57.1
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.4e-14 81.3 63 57.1
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 3.4e-14 81.3 64 57.8
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 4.5e-14 80.9 64 57.8
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 4.5e-14 80.9 64 62.5
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 4.5e-14 80.9 72 51.4
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 5.9e-14 80.5 63 57.1
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 5.9e-14 80.5 57 61.4
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.0e-13 79.7 61 59.0
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.0e-13 79.7 65 55.4
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 1.7e-13 79.0 70 51.4
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 1.7e-13 79.0 72 52.8
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.2e-13 78.6 70 55.7
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 2.2e-13 78.6 77 50.6
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 2.9e-13 78.2 70 50.0
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 2.9e-13 78.2 67 58.2
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.9e-13 78.2 70 51.4
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 3.8e-13 77.8 61 57.4
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 3.8e-13 77.8 68 54.4
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 5.0e-13 77.4 67 56.7
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 5.0e-13 77.4 62 62.9
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 6.5e-13 77.0 62 58.1
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 6.5e-13 77.0 72 52.8
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 6.5e-13 77.0 72 52.8
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 8.5e-13 76.6 62 56.5
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 8.5e-13 76.6 63 61.9
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 8.5e-13 76.6 63 55.6
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 1.1e-12 76.3 64 60.9
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.1e-12 76.3 65 61.5
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.9e-12 75.5 63 55.6
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.9e-12 75.5 65 58.5
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 2.5e-12 75.1 65 55.4
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.5e-12 75.1 68 52.9
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 3.2e-12 74.7 60 58.3
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 3.2e-12 74.7 72 51.4
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 4.2e-12 74.3 76 46.1
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 4.2e-12 74.3 75 49.3
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 4.2e-12 74.3 75 49.3
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 5.5e-12 73.9 75 49.3
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 7.2e-12 73.6 75 48.0
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 7.2e-12 73.6 75 48.0
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 7.2e-12 73.6 61 52.5
Gohir.A04G083300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 7.2e-12 73.6 68 52.9
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 9.4e-12 73.2 64 53.1
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.1e-11 72.0 60 53.3
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 2.1e-11 72.0 74 51.4
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 2.7e-11 71.6 62 53.2
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.7e-11 71.6 70 48.6
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 3.6e-11 71.2 63 55.6
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 3.6e-11 71.2 61 54.1
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 7.9e-11 70.1 75 46.7
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 7.9e-11 70.1 70 47.1
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 7.9e-11 70.1 67 52.2
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 7.9e-11 70.1 64 53.1
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 7.9e-11 70.1 61 54.1
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.0e-10 69.7 61 55.7
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.4e-10 69.3 84 51.2
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 1.4e-10 69.3 60 53.3
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 1.8e-10 68.9 61 49.2
Ah.16g102460 Amaranthus hybridus HOM05D004372 ORTHO05D004331 2.3e-10 68.6 56 58.9
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.3e-10 68.6 67 52.2
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 3.9e-10 67.8 62 54.8
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 3.9e-10 67.8 65 52.3
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 5.1e-10 67.4 63 46.0
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 5.1e-10 67.4 75 42.7
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 5.1e-10 67.4 70 52.9
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 5.1e-10 67.4 54 55.6
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 8.8e-10 66.6 65 47.7
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 8.8e-10 66.6 65 47.7
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 1.5e-09 65.9 61 47.5
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 3.3e-09 64.7 71 47.9
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 4.3e-09 64.3 65 52.3
TWI74G0654 Tripterygium wilfordii HOM05D004372 ORTHO05D004331 4.3e-09 64.3 63 54.0
CiPaw.09G194900 Carya illinoinensis HOM05D004372 ORTHO05D004331 5.7e-09 63.9 62 48.4
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 7.4e-09 63.5 67 44.8
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 7.4e-09 63.5 62 54.8
AL3G43490 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.3e-08 62.8 63 42.9
Migut.F00765 Erythranthe guttata HOM05D004372 ORTHO05D004331 1.3e-08 62.8 54 53.7
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.3e-08 62.8 70 54.3
ATR0559G371 Amborella trichopoda HOM05D004372 ORTHO05D004331 2.2e-08 62.0 63 47.6
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.2e-08 62.0 66 43.9
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 2.8e-08 61.6 59 47.5
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 4.8e-08 60.8 63 49.2
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.3e-08 60.5 69 42.0
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 6.3e-08 60.5 63 46.0
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 8.2e-08 60.1 82 40.2
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 8.2e-08 60.1 82 40.2
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 8.2e-08 60.1 51 52.9
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 1.1e-07 59.7 62 48.4
Zm00001eb211640 Zea mays HOM05D004372 ORTHO05D004331 1.4e-07 59.3 89 38.2
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.8e-07 58.9 69 42.0
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 3.1e-07 58.2 62 43.5
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 4.1e-07 57.8 75 41.3
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 4.1e-07 57.8 75 41.3
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.1e-07 57.8 61 47.5
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 5.3e-07 57.4 69 47.8
Cfa021240 Carpinus fangiana HOM05D004372 ORTHO05D004331 5.3e-07 57.4 43 60.5
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 9.1e-07 56.6 62 50.0
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 2.0e-06 55.5 64 45.3
DCAR_007435 Daucus carota HOM05D004372 ORTHO05D004331 2.0e-06 55.5 55 50.9
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 2.0e-06 55.5 60 46.7
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 2.6e-06 55.1 53 43.4
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.4e-06 54.7 56 50.0
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 4.5e-06 54.3 72 38.9
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 4.5e-06 54.3 57 49.1
PGSC0003DMG400030326 Solanum tuberosum HOM05D004372 ORTHO05D004331 4.5e-06 54.3 59 42.4
Thecc.10G036700 Theobroma cacao HOM05D022458 ORTHO05D025182 4.5e-06 54.3 65 47.7
EL10Ac7g16049 Beta vulgaris HOM05D004372 ORTHO05D004331 5.9e-06 53.9 64 48.4
Migut.L01954 Erythranthe guttata HOM05D004372 ORTHO05D004331 5.9e-06 53.9 66 43.9
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 5.9e-06 53.9 66 45.5
Potri.009G034001 Populus trichocarpa HOM05D004372 ORTHO05D004331 5.9e-06 53.9 50 54.0
PGR004G0648 Punica granatum HOM05D004372 ORTHO05D004331 5.9e-06 53.9 59 44.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.9e-06 53.9 62 43.5
unitig_0.g1563 Utricularia gibba HOM05D055379 ORTHO05D004331 5.9e-06 53.9 62 50.0
BcaNung05346 Brassica carinata HOM05D002383 ORTHO05D002515 7.7e-06 53.5 55 49.1
BcaNung05347 Brassica carinata HOM05D002383 ORTHO05D002515 7.7e-06 53.5 55 49.1
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 7.7e-06 53.5 63 41.3
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 7.7e-06 53.5 60 43.3
Sopen05g031570 Solanum pennellii HOM05D004372 ORTHO05D004331 7.7e-06 53.5 61 44.3


User provided reference genes

Program Settings