Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3116 Trochodendron aralioides HOM05D000127 ORTHO05D013384 1.0e-54 216.5 109 100.0
TAR365G0800 Trochodendron aralioides HOM05D000127 ORTHO05D000792 7.8e-18 94.0 52 88.5
Haze_00737 Corylus avellana HOM05D000127 ORTHO05D000792 4.0e-14 81.6 56 71.4
QL06p014861 Quercus lobata HOM05D000127 ORTHO05D000792 5.8e-13 77.8 77 57.1
QL06p014888 Quercus lobata HOM05D000127 ORTHO05D000792 5.8e-13 77.8 77 57.1
GSVIVG01017721001 Vitis vinifera HOM05D000127 ORTHO05D000792 1.7e-12 76.3 61 67.2
CiPaw.01G126700 Carya illinoinensis HOM05D000127 ORTHO05D000792 2.9e-12 75.5 61 59.0
Cfa015764 Carpinus fangiana HOM05D000127 ORTHO05D000792 4.9e-12 74.7 56 66.1
MBI18_g03879_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000792 4.1e-11 71.6 70 54.3
PGR031G2203 Punica granatum HOM05D000127 ORTHO05D000792 4.1e-11 71.6 51 72.5
Phvul.011G019400 Phaseolus vulgaris HOM05D000127 ORTHO05D000792 5.4e-11 71.2 52 63.5
TWI38G1845 Tripterygium wilfordii HOM05D000127 ORTHO05D000792 5.4e-11 71.2 49 75.5
CSS0010543 Camellia sinensis var. sinensis HOM05D000127 ORTHO05D000792 9.2e-11 70.5 46 69.6
Lalb_Chr01g0000871 Lupinus albus HOM05D000127 ORTHO05D000792 1.6e-10 69.7 76 48.7
TAR624G0073 Trochodendron aralioides HOM05D000127 ORTHO05D013384 1.6e-10 69.7 50 72.0
Lalb_Chr07g0181521 Lupinus albus HOM05D000127 ORTHO05D000792 3.5e-10 68.6 60 53.3
MBI18_g28936_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000792 3.5e-10 68.6 61 54.1
AT3G17630 Arabidopsis thaliana HOM05D000127 ORTHO05D000792 4.6e-10 68.2 57 59.6
Glyma.13G116400 Glycine max HOM05D000127 ORTHO05D000792 4.6e-10 68.2 67 50.7
Glyma.17G043400 Glycine max HOM05D000127 ORTHO05D000792 4.6e-10 68.2 60 51.7
CDE08G1076 Ceratophyllum demersum HOM05D000127 ORTHO05D000792 6.0e-10 67.8 61 54.1
Ca_21354_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000792 6.0e-10 67.8 49 65.3
Lj4g0027024 Lotus japonicus HOM05D000127 ORTHO05D000792 6.0e-10 67.8 50 62.0
CDE01G0347 Ceratophyllum demersum HOM05D000127 ORTHO05D000792 7.8e-10 67.4 60 53.3
Nn4g25246 Nelumbo nucifera HOM05D000127 ORTHO05D000792 7.8e-10 67.4 51 68.6
BcaB04g20831 Brassica carinata HOM05D000127 ORTHO05D000792 1.0e-09 67.0 54 59.3
Glyma.13G081300 Glycine max HOM05D000127 ORTHO05D000792 1.0e-09 67.0 49 63.3
Carub.0003s1734 Capsella rubella HOM05D000127 ORTHO05D000792 1.3e-09 66.6 61 54.1
AL3G30710 Arabidopsis lyrata HOM05D000127 ORTHO05D000792 1.7e-09 66.2 54 59.3
Lalb_Chr03g0024381 Lupinus albus HOM05D000127 ORTHO05D000792 1.7e-09 66.2 49 63.3
Thhalv10020094m.g Eutrema salsugineum HOM05D000127 ORTHO05D000792 3.0e-09 65.5 54 57.4
Sabra10G0004400 Salix brachista HOM05D000127 ORTHO05D000792 5.0e-09 64.7 46 71.7
VMungo1127G1008 Vigna mungo HOM05D000127 ORTHO05D000792 5.0e-09 64.7 52 57.7
Lj3g0007466 Lotus japonicus HOM05D000127 ORTHO05D000792 6.6e-09 64.3 46 63.0
Phvul.003G125300 Phaseolus vulgaris HOM05D000127 ORTHO05D000792 6.6e-09 64.3 60 51.7
VMungo1215G1171 Vigna mungo HOM05D000127 ORTHO05D000792 6.6e-09 64.3 64 50.0
Ciclev10018885m.g Citrus clementina HOM05D000127 ORTHO05D000792 8.6e-09 63.9 57 61.4
Potri.010G005200 Populus trichocarpa HOM05D000127 ORTHO05D000792 1.1e-08 63.5 46 71.7
Psat4g020360 Pisum sativum HOM05D000127 ORTHO05D000792 1.5e-08 63.2 46 63.0
Psat7g170360 Pisum sativum HOM05D000127 ORTHO05D000792 1.5e-08 63.2 52 57.7
Prupe.1G209400 Prunus persica HOM05D000127 ORTHO05D000792 1.5e-08 63.2 58 62.1
Sp3g15760 Schrenkiella parvula HOM05D000127 ORTHO05D000792 1.9e-08 62.8 54 57.4
Ca_18957_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000792 3.3e-08 62.0 51 56.9
Lalb_Chr12g0200441 Lupinus albus HOM05D000127 ORTHO05D000792 3.3e-08 62.0 50 56.0
Potri.010G004800 Populus trichocarpa HOM05D000127 ORTHO05D000792 3.3e-08 62.0 46 69.6
MD16G1131400 Malus domestica HOM05D000127 ORTHO05D000792 4.3e-08 61.6 69 53.6
TWI38G0668 Tripterygium wilfordii HOM05D000127 ORTHO05D000792 4.3e-08 61.6 57 57.9
Aa31LG8G4500 Aethionema arabicum HOM05D000127 ORTHO05D000792 5.6e-08 61.2 54 53.7
arahy.Tifrunner.gnm1.ann1.0SD0YX Arachis hypogaea HOM05D000127 ORTHO05D000792 5.6e-08 61.2 49 59.2
CARHR092960 Cardamine hirsuta HOM05D000127 ORTHO05D000792 5.6e-08 61.2 54 55.6
arahy.Tifrunner.gnm1.ann1.P4VL2P Arachis hypogaea HOM05D000127 ORTHO05D000792 7.3e-08 60.8 49 59.2
MD13G1136000 Malus domestica HOM05D000127 ORTHO05D000792 7.3e-08 60.8 69 52.2
Medtr4g078120 Medicago truncatula HOM05D000127 ORTHO05D000792 9.5e-08 60.5 70 44.3
arahy.Tifrunner.gnm1.ann1.D6V4QV Arachis hypogaea HOM05D000127 ORTHO05D000792 1.2e-07 60.1 61 54.1
arahy.Tifrunner.gnm1.ann1.GDW47Z Arachis hypogaea HOM05D000127 ORTHO05D000792 1.6e-07 59.7 61 52.5
TPR.G8417 Trifolium pratense HOM05D000127 ORTHO05D000792 1.6e-07 59.7 52 55.8
RcHm_v2.0_Chr3g0483861 Rosa chinensis HOM05D000127 ORTHO05D000792 2.1e-07 59.3 57 54.4
BcaC01g03745 Brassica carinata HOM05D000127 ORTHO05D013384 2.8e-07 58.9 54 53.7
BcaC01g03746 Brassica carinata HOM05D000127 ORTHO05D000792 2.8e-07 58.9 54 53.7
A03p40280 Brassica napus HOM05D000127 ORTHO05D000792 2.8e-07 58.9 54 53.7
C03p48980 Brassica napus HOM05D000127 ORTHO05D000792 2.8e-07 58.9 54 53.7
BolC3t17178H Brassica oleracea HOM05D000127 ORTHO05D000792 2.8e-07 58.9 54 53.7
BraA03t13180Z Brassica rapa HOM05D000127 ORTHO05D000792 2.8e-07 58.9 54 53.7
Duzib128G1754 Durio zibethinus HOM05D000127 ORTHO05D000792 2.8e-07 58.9 48 62.5
FvH4_4g21880 Fragaria vesca HOM05D000127 ORTHO05D000792 6.2e-07 57.8 47 61.7
FAN07G1286 Fragaria x ananassa HOM05D000127 ORTHO05D000792 6.2e-07 57.8 47 61.7
FAN12G3355 Fragaria x ananassa HOM05D000127 ORTHO05D000792 6.2e-07 57.8 47 61.7
HPP92_010867 Vanilla planifolia HOM05D000127 ORTHO05D000792 6.2e-07 57.8 44 56.8
Aqoxy5G00554 Aquilegia oxysepala HOM05D000127 ORTHO05D000792 1.1e-06 57.0 68 44.1
BcaB04g18955 Brassica carinata HOM05D000127 ORTHO05D000792 1.1e-06 57.0 54 50.0
Gohir.D03G070600 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.4e-06 56.6 65 47.7
Gorai.003G089400 Gossypium raimondii HOM05D000127 ORTHO05D000792 1.4e-06 56.6 65 47.7
Gohir.A02G103300 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.8e-06 56.2 49 61.2
Gohir.A02G107001 Gossypium hirsutum HOM05D000127 ORTHO05D000792 1.8e-06 56.2 48 60.4
VMungo0420G0001 Vigna mungo HOM05D000127 ORTHO05D000792 1.8e-06 56.2 48 56.2
Duzib093G2123 Durio zibethinus HOM05D000127 ORTHO05D000792 3.1e-06 55.5 48 54.2
Lj3A842T59 Lonicera japonica HOM05D000127 ORTHO05D000792 3.1e-06 55.5 47 61.7
Os05g0276100 Oryza sativa ssp. japonica HOM05D000127 ORTHO05D000792 3.1e-06 55.5 45 60.0
PSO761G0654 Papaver somniferum HOM05D000127 ORTHO05D000792 4.0e-06 55.1 64 50.0
COL.COLO4_28670 Corchorus olitorius HOM05D000127 ORTHO05D000792 5.2e-06 54.7 65 44.6
Gohir.D03G080700 Gossypium hirsutum HOM05D000127 ORTHO05D000792 5.2e-06 54.7 49 59.2
Gorai.003G083300 Gossypium raimondii HOM05D000127 ORTHO05D000792 5.2e-06 54.7 49 59.2
Medtr4g123583 Medicago truncatula HOM05D000127 ORTHO05D000792 5.2e-06 54.7 46 56.5
Thecc.05G161700 Theobroma cacao HOM05D000127 ORTHO05D000792 5.2e-06 54.7 48 54.2
ATR0064G070 Amborella trichopoda HOM05D000127 ORTHO05D000243 8.9e-06 53.9 93 34.4
MBI15_g33470_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 8.9e-06 53.9 57 50.9
Os03g0828600 Oryza sativa ssp. japonica HOM05D000127 ORTHO05D000792 8.9e-06 53.9 57 49.1


User provided reference genes

Program Settings