Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.8e-284 979.9 481 100.0
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.7e-230 800.8 493 84.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 3.1e-183 645.6 491 71.5
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.6e-176 623.2 485 68.7
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.7e-173 613.2 468 68.2
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 8.3e-173 610.9 485 67.0
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.1e-169 600.5 494 68.4
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.6e-166 589.3 482 66.0
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-160 570.5 488 65.8
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 1.7e-157 560.1 487 62.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.9e-157 559.3 486 62.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.1e-156 557.4 487 61.8
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.6e-155 553.5 488 60.9
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.0e-154 550.8 491 61.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.1e-152 541.2 487 61.0
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.1e-151 540.8 487 61.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 6.9e-151 538.1 489 61.3
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 9.0e-151 537.7 485 61.9
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.5e-150 537.0 488 59.8
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.2e-149 533.1 491 59.7
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.9e-149 531.9 490 59.6
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 4.9e-149 531.9 491 60.7
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 6.4e-149 531.6 491 59.9
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.4e-148 529.6 492 61.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 7.8e-147 524.6 499 61.1
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.0e-146 522.7 484 60.5
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 3.0e-146 522.7 467 62.5
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.9e-146 522.3 487 58.7
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.5e-145 520.4 487 60.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 4.3e-145 518.8 485 61.0
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.1e-144 516.5 458 60.5
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.2e-142 510.8 490 59.0
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.0e-142 510.0 486 60.7
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.6e-142 509.6 482 59.3
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.9e-141 506.1 486 59.5
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.1e-140 504.2 498 58.0
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 3.2e-140 502.7 469 58.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 9.3e-140 501.1 483 58.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.3e-140 501.1 483 58.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.3e-140 501.1 483 58.2
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.6e-139 498.8 483 58.0
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.8e-138 496.9 485 58.6
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 8.7e-138 494.6 470 57.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.9e-137 493.4 492 56.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 4.8e-136 488.8 488 57.8
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 6.2e-136 488.4 435 59.8
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.1e-135 487.6 469 58.2
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.2e-134 484.2 469 57.8
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.5e-129 467.2 469 55.9
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.8e-127 460.3 406 61.6
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-123 447.6 396 61.4
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.6e-123 447.2 404 61.6
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.8e-122 443.7 404 61.4
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.8e-122 443.7 395 60.8
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 8.7e-122 441.4 569 49.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.6e-120 437.2 419 58.2
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.6e-120 437.2 387 63.0
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.4e-119 433.3 420 57.1
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.2e-118 431.0 488 54.3
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 4.5e-118 429.1 487 55.0
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.3e-117 427.6 470 53.6
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 5.0e-117 425.6 438 55.7
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 5.0e-117 425.6 469 51.4
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 6.5e-117 425.2 403 62.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.1e-114 415.6 420 56.0
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 6.7e-114 415.2 396 58.3
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 1.1e-113 414.5 420 55.7
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 1.1e-113 414.5 468 52.1
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.2e-112 410.2 526 49.4
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 3.1e-111 406.4 416 56.2
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 5.3e-111 405.6 470 52.6
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 2.6e-110 403.3 419 55.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.6e-110 403.3 406 56.7
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 7.7e-110 401.7 406 57.1
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 6.5e-109 398.7 420 55.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.5e-108 395.6 466 52.4
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.1e-107 393.7 422 54.3
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.7e-106 388.7 487 48.7
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 7.4e-105 385.2 475 50.1
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.1e-103 379.8 485 49.5
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 3.1e-103 379.8 440 50.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 9.1e-103 378.3 445 51.5
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 4.5e-102 375.9 419 51.8
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.7e-101 374.0 406 54.2
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 6.5e-101 372.1 493 47.9
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.1e-100 371.3 471 49.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 2.1e-99 367.1 438 50.2
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 8.8e-98 361.7 373 60.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 8.2e-96 355.1 466 47.4
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 7.0e-95 352.1 485 45.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 8.5e-93 345.1 465 47.3
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.9e-92 344.0 445 47.4
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 5.5e-92 342.4 430 48.4
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.6e-91 340.9 451 47.2
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 8.0e-91 338.6 373 54.2
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.7e-88 330.9 403 48.9
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 3.1e-87 326.6 392 49.5
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 6.5e-85 318.9 341 55.4
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 4.2e-84 316.2 415 47.5
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 9.4e-84 315.1 412 47.8
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 9.4e-84 315.1 391 49.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 2.1e-83 313.9 440 45.9
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.7e-83 312.8 411 47.0
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 2.8e-80 303.5 398 48.0
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.4e-79 301.2 371 49.1
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 5.4e-79 299.3 404 47.3
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.2e-78 298.1 423 45.4
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 2.5e-76 290.4 450 45.3
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 9.5e-76 288.5 408 45.3
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 9.5e-76 288.5 408 45.3
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 9.5e-76 288.5 421 44.2
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 9.8e-73 278.5 278 55.4
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.3e-69 268.1 247 59.9
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.9e-68 264.2 259 57.1
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.9e-68 264.2 334 47.9
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 3.2e-63 246.9 304 48.7
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 6.6e-61 239.2 480 39.4
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 9.5e-60 235.3 255 50.2
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.6e-59 234.6 302 47.0
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.4e-57 226.5 252 48.8
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.7e-56 224.6 381 42.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 1.5e-52 211.5 226 50.0
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 2.3e-50 204.1 367 41.4
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 5.8e-49 199.5 347 41.5
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.2e-48 197.6 251 43.8
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 5.8e-41 172.9 108 77.8
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.2e-39 167.2 367 34.1
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.9e-36 157.9 396 34.1
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.2e-33 148.7 215 38.1
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 8.4e-32 142.5 164 51.2
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 9.3e-31 139.0 204 41.2
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.5e-30 137.1 484 28.5
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.5e-28 131.0 181 38.1
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.2e-25 122.1 85 72.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 3.2e-23 114.0 101 47.5
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 2.7e-22 110.9 157 44.6
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.1e-20 105.5 202 39.1
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 9.6e-20 102.4 68 75.0
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 7.2e-07 59.7 67 44.8


User provided reference genes

Program Settings