Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3039 Trochodendron aralioides HOM05D000089 ORTHO05D023462 1.5e-46 189.1 95 100.0
TAR247G0003 Trochodendron aralioides HOM05D000089 ORTHO05D000726 1.7e-16 89.4 48 85.4
Duzib116G0791 Durio zibethinus HOM05D000089 ORTHO05D000726 1.2e-14 83.2 59 62.7
SEGI_04496 Sequoiadendron giganteum HOM05D000089 ORTHO05D000726 3.5e-14 81.6 59 64.4
TWI56G0674 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 3.5e-14 81.6 62 62.9
Sc02g0005910 Simmondsia chinensis HOM05D000089 ORTHO05D000726 5.9e-14 80.9 66 54.5
Duzib116G0140 Durio zibethinus HOM05D000089 ORTHO05D000726 7.7e-14 80.5 59 61.0
Potri.002G033600 Populus trichocarpa HOM05D000089 ORTHO05D000726 7.7e-14 80.5 72 52.8
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 1.3e-13 79.7 60 60.0
COL.COLO4_26275 Corchorus olitorius HOM05D000089 ORTHO05D000726 1.7e-13 79.3 55 61.8
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 1.7e-13 79.3 57 63.2
Haze_22530 Corylus avellana HOM05D000089 ORTHO05D000726 2.3e-13 79.0 51 70.6
Gohir.A05G192500 Gossypium hirsutum HOM05D000089 ORTHO05D000726 2.3e-13 79.0 60 60.0
Gohir.D05G195700 Gossypium hirsutum HOM05D000089 ORTHO05D000726 2.3e-13 79.0 60 60.0
Gorai.009G200600 Gossypium raimondii HOM05D000089 ORTHO05D000726 2.9e-13 78.6 60 60.0
QL02p009167 Quercus lobata HOM05D000089 ORTHO05D000726 8.6e-13 77.0 73 49.3
Thecc.08G030500 Theobroma cacao HOM05D000089 ORTHO05D000726 8.6e-13 77.0 59 59.3
VMungo0647G1542 Vigna mungo HOM05D000089 ORTHO05D000726 8.6e-13 77.0 76 44.7
Phvul.001G012800 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 1.1e-12 76.6 76 44.7
ATR0568G011 Amborella trichopoda HOM05D000089 ORTHO05D000726 1.9e-12 75.9 55 61.8
Glyma.14G072700 Glycine max HOM05D000089 ORTHO05D000726 1.9e-12 75.9 76 47.4
Psat4g191760 Pisum sativum HOM05D000089 ORTHO05D000726 1.9e-12 75.9 66 48.5
Potri.005G229500 Populus trichocarpa HOM05D000089 ORTHO05D000726 1.9e-12 75.9 72 51.4
GSVIVG01009743001 Vitis vinifera HOM05D000089 ORTHO05D000726 1.9e-12 75.9 55 61.8
Glyma.17G252200 Glycine max HOM05D000089 ORTHO05D000726 2.5e-12 75.5 62 50.0
MD15G1024100 Malus domestica HOM05D000089 ORTHO05D000726 2.5e-12 75.5 75 46.7
Ca_18051_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000726 3.2e-12 75.1 69 44.9
DCAR_021485 Daucus carota HOM05D000089 ORTHO05D000726 3.2e-12 75.1 73 49.3
Glyma.02G158700 Glycine max HOM05D000089 ORTHO05D000726 3.2e-12 75.1 77 49.4
Medtr1g022440 Medicago truncatula HOM05D000089 ORTHO05D000726 4.2e-12 74.7 55 58.2
Cfa013855 Carpinus fangiana HOM05D000089 ORTHO05D000726 5.5e-12 74.3 72 48.6
Ciclev10001757m.g Citrus clementina HOM05D000089 ORTHO05D000726 5.5e-12 74.3 55 58.2
Haze_22529 Corylus avellana HOM05D000089 ORTHO05D000726 5.5e-12 74.3 72 48.6
TWI53G1865 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 5.5e-12 74.3 55 60.0
Lj5g0017190 Lotus japonicus HOM05D000089 ORTHO05D000726 7.2e-12 73.9 55 54.5
Dinv13498 Davidia involucrata HOM05D000089 ORTHO05D000726 9.5e-12 73.6 55 58.2
Gohir.A06G008700 Gossypium hirsutum HOM05D000089 ORTHO05D000726 9.5e-12 73.6 60 58.3
Lj5g0004163 Lotus japonicus HOM05D000089 ORTHO05D000726 9.5e-12 73.6 76 47.4
Sc26g0003530 Simmondsia chinensis HOM05D000089 ORTHO05D000726 9.5e-12 73.6 60 53.3
Aqoxy6G01153 Aquilegia oxysepala HOM05D000089 ORTHO05D000726 1.2e-11 73.2 55 60.0
Lj5g0013235 Lotus japonicus HOM05D000089 ORTHO05D000726 1.2e-11 73.2 76 46.1
MD08G1028600 Malus domestica HOM05D000089 ORTHO05D000726 1.2e-11 73.2 76 43.4
Sabra02G0027000 Salix brachista HOM05D000089 ORTHO05D000726 1.2e-11 73.2 72 47.2
Gohir.D06G004300 Gossypium hirsutum HOM05D000089 ORTHO05D000726 1.6e-11 72.8 60 58.3
Gorai.010G008900 Gossypium raimondii HOM05D000089 ORTHO05D000726 1.6e-11 72.8 60 58.3
Lj5g0010967 Lotus japonicus HOM05D000089 ORTHO05D000726 1.6e-11 72.8 72 48.6
QL02p009158 Quercus lobata HOM05D000089 ORTHO05D000726 1.6e-11 72.8 72 47.2
SEGI_23444 Sequoiadendron giganteum HOM05D000089 ORTHO05D000726 1.6e-11 72.8 61 52.5
CiPaw.07G159200 Carya illinoinensis HOM05D000089 ORTHO05D000726 2.1e-11 72.4 78 46.2
FAN20G2867 Fragaria x ananassa HOM05D000089 ORTHO05D000726 2.1e-11 72.4 76 46.1
HanXRQChr13g0407201 Helianthus annuus HOM05D000089 ORTHO05D000726 2.1e-11 72.4 72 50.0
Phvul.001G012700 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 2.1e-11 72.4 74 47.3
RcHm_v2.0_Chr6g0301421 Rosa chinensis HOM05D000089 ORTHO05D000726 2.1e-11 72.4 76 47.4
Lsat_1_v5_gn_2_77261 Lactuca sativa HOM05D000089 ORTHO05D000726 2.8e-11 72.0 72 50.0
TWI74G0702 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 2.8e-11 72.0 59 54.2
Atru.chr13.438 Acer truncatum HOM05D000089 ORTHO05D000726 3.6e-11 71.6 63 52.4
CAN.G358.55 Capsicum annuum HOM05D000089 ORTHO05D000726 3.6e-11 71.6 55 58.2
FAN27G2404 Fragaria x ananassa HOM05D000089 ORTHO05D000726 3.6e-11 71.6 76 46.1
Sc26g0003580 Simmondsia chinensis HOM05D000089 ORTHO05D000726 3.6e-11 71.6 57 54.4
THA.LOC104801920 Tarenaya hassleriana HOM05D000089 ORTHO05D000726 3.6e-11 71.6 60 53.3
CANSAT80G0914 Cannabis sativa HOM05D000089 ORTHO05D000726 4.7e-11 71.2 55 54.5
PSO699G0052 Papaver somniferum HOM05D000089 ORTHO05D000726 4.7e-11 71.2 73 43.8
PSO764G0009 Papaver somniferum HOM05D000089 ORTHO05D000726 4.7e-11 71.2 73 43.8
Prupe.1G376400 Prunus persica HOM05D000089 ORTHO05D000726 4.7e-11 71.2 59 50.8
ECA238G0235 Erigeron canadensis HOM05D000089 ORTHO05D000726 6.1e-11 70.9 72 50.0
Ah.05g177060 Amaranthus hybridus HOM05D000089 ORTHO05D000726 8.0e-11 70.5 58 50.0
CSS0000672 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 8.0e-11 70.5 55 56.4
CiPaw.07G159100 Carya illinoinensis HOM05D000089 ORTHO05D000726 8.0e-11 70.5 55 52.7
FAN20G2627 Fragaria x ananassa HOM05D000089 ORTHO05D000726 8.0e-11 70.5 74 45.9
Nitab4.5_0000178g0360 Nicotiana tabacum HOM05D000089 ORTHO05D000726 8.0e-11 70.5 73 46.6
Peaxi162Scf00366g00630 Petunia axillaris HOM05D000089 ORTHO05D000726 1.0e-10 70.1 73 46.6
PGR083G2783 Punica granatum HOM05D000089 ORTHO05D000726 1.0e-10 70.1 55 58.2
Sabra05G0177300 Salix brachista HOM05D000089 ORTHO05D000726 1.0e-10 70.1 72 47.2
TPR.G20181 Trifolium pratense HOM05D000089 ORTHO05D000726 1.0e-10 70.1 76 42.1
Lj6g0023947 Lotus japonicus HOM05D000089 ORTHO05D000726 1.4e-10 69.7 76 44.7
MBI16_g08805_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000726 1.4e-10 69.7 62 51.6
FvH4_2g39520 Fragaria vesca HOM05D000089 ORTHO05D000726 1.8e-10 69.3 74 44.6
Lalb_Chr22g0354671 Lupinus albus HOM05D000089 ORTHO05D000726 1.8e-10 69.3 77 42.9
Manes.18G022300 Manihot esculenta HOM05D000089 ORTHO05D000726 1.8e-10 69.3 72 41.7
unitig_0.g403 Utricularia gibba HOM05D000089 ORTHO05D023462 1.8e-10 69.3 53 56.6
vmacro17816 Vaccinium macrocarpon HOM05D000089 ORTHO05D000726 1.8e-10 69.3 55 56.4
arahy.Tifrunner.gnm1.ann1.7JZ58T Arachis hypogaea HOM05D000089 ORTHO05D000726 2.3e-10 68.9 77 41.6
arahy.Tifrunner.gnm1.ann1.X8EVF3 Arachis hypogaea HOM05D000089 ORTHO05D000726 2.3e-10 68.9 77 41.6
FAN27G2720 Fragaria x ananassa HOM05D004347 ORTHO05D005270 3.0e-10 68.6 74 44.6
Nitab4.5_0007770g0040 Nicotiana tabacum HOM05D000089 ORTHO05D000726 3.0e-10 68.6 55 52.7
PGR083G1459 Punica granatum HOM05D000089 ORTHO05D000726 3.0e-10 68.6 55 54.5
AT5G42800 Arabidopsis thaliana HOM05D000089 ORTHO05D000726 5.2e-10 67.8 55 54.5
Ca_18050_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000726 5.2e-10 67.8 52 53.8
FAN15G0069 Fragaria x ananassa HOM05D000089 ORTHO05D000726 5.2e-10 67.8 74 44.6
Medtr1g022445 Medicago truncatula HOM05D000089 ORTHO05D000726 5.2e-10 67.8 76 44.7
Glyma.14G072900 Glycine max HOM05D000089 ORTHO05D023462 8.8e-10 67.0 50 54.0
Nn5g28053 Nelumbo nucifera HOM05D000089 ORTHO05D000726 8.8e-10 67.0 55 54.5
Rhsim08G0119200 Rhododendron simsii HOM05D000089 ORTHO05D000726 8.8e-10 67.0 55 54.5
AL61U10020 Arabidopsis lyrata HOM05D000089 ORTHO05D000726 1.2e-09 66.6 55 52.7
Hma1.2p1_0224F.1_g094480 Hydrangea macrophylla HOM05D000089 ORTHO05D000726 1.2e-09 66.6 55 52.7
Hma1.2p1_0789F.1_g218150 Hydrangea macrophylla HOM05D000089 ORTHO05D000726 1.2e-09 66.6 72 47.2
Nitab4.5_0007490g0080 Nicotiana tabacum HOM05D000089 ORTHO05D000726 1.2e-09 66.6 73 43.8
Solyc02g085020.4 Solanum lycopersicum HOM05D000089 ORTHO05D000726 1.2e-09 66.6 73 43.8
Sopen02g029720 Solanum pennellii HOM05D000089 ORTHO05D000726 1.2e-09 66.6 73 43.8
vmacro17815 Vaccinium macrocarpon HOM05D000089 ORTHO05D000726 1.2e-09 66.6 55 56.4
PGSC0003DMG400003605 Solanum tuberosum HOM05D000089 ORTHO05D000726 1.5e-09 66.2 73 45.2
Hund26911 Selenicereus undatus HOM05D000089 ORTHO05D000726 2.0e-09 65.9 55 49.1
C09p25350 Brassica napus HOM05D000089 ORTHO05D000726 2.6e-09 65.5 55 52.7
Dinv40007 Davidia involucrata HOM05D000089 ORTHO05D000726 3.4e-09 65.1 55 52.7
Eucgr.F01589 Eucalyptus grandis HOM05D000089 ORTHO05D000726 4.4e-09 64.7 55 47.3
EL10Ac1g00649 Beta vulgaris HOM05D000089 ORTHO05D000726 5.7e-09 64.3 72 38.9
Carub.0008s0610 Capsella rubella HOM05D000089 ORTHO05D000726 5.7e-09 64.3 55 50.9
Cpa.g.sc12.12 Carica papaya HOM05D000089 ORTHO05D000726 5.7e-09 64.3 60 50.0
Sc02g0002460 Simmondsia chinensis HOM05D000089 ORTHO05D000726 5.7e-09 64.3 64 43.8
Sc02g0002510 Simmondsia chinensis HOM05D000089 ORTHO05D000726 5.7e-09 64.3 64 43.8
ATR0105G013 Amborella trichopoda HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 54.5
BcaB07g31043 Brassica carinata HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 50.9
BcaC04g21969 Brassica carinata HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 50.9
A09p19990 Brassica napus HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 50.9
BolC9t55434H Brassica oleracea HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 50.9
BraA09t37608Z Brassica rapa HOM05D000089 ORTHO05D000726 9.8e-09 63.5 55 50.9
Cc07_g09810 Coffea canephora HOM05D000089 ORTHO05D000726 9.8e-09 63.5 72 44.4
Dinv40008 Davidia involucrata HOM05D000089 ORTHO05D000726 9.8e-09 63.5 72 44.4
Thhalv10003227m.g Eutrema salsugineum HOM05D000089 ORTHO05D000726 9.8e-09 63.5 72 45.8
Zm00001eb359030 Zea mays HOM05D000089 ORTHO05D000726 9.8e-09 63.5 72 37.5
GSVIVG01024432001 Vitis vinifera HOM05D000089 ORTHO05D023462 1.7e-08 62.8 73 46.6
CARHR181470 Cardamine hirsuta HOM05D000089 ORTHO05D000726 2.2e-08 62.4 85 38.8
Migut.H02531 Erythranthe guttata HOM05D000089 ORTHO05D000726 2.2e-08 62.4 77 40.3
Nn1g04931 Nelumbo nucifera HOM05D000089 ORTHO05D000726 2.2e-08 62.4 55 47.3
VMungo0720G0247 Vigna mungo HOM05D000089 ORTHO05D000726 2.2e-08 62.4 77 41.6
Oeu057948.1 Olea europaea HOM05D000089 ORTHO05D000726 2.8e-08 62.0 55 47.3
Phvul.007G246200 Phaseolus vulgaris HOM05D000089 ORTHO05D000726 2.8e-08 62.0 72 43.1
AUR62014502 Chenopodium quinoa HOM05D000089 ORTHO05D000726 3.7e-08 61.6 55 43.6
AUR62038033 Chenopodium quinoa HOM05D000089 ORTHO05D000726 3.7e-08 61.6 55 43.6
Potri.002G147500 Populus trichocarpa HOM05D000089 ORTHO05D000726 3.7e-08 61.6 63 49.2
Potri.002G147800 Populus trichocarpa HOM05D000089 ORTHO05D000726 3.7e-08 61.6 63 49.2
SGA_v2.0_scaffold10G05192 Striga asiatica HOM05D000089 ORTHO05D000726 3.7e-08 61.6 60 43.3
Zm00001eb159020 Zea mays HOM05D000089 ORTHO05D000726 3.7e-08 61.6 73 43.8
AL8G18230 Arabidopsis lyrata HOM05D000089 ORTHO05D000726 4.9e-08 61.2 52 51.9
MSTRG.23242 Avicennia marina HOM05D000089 ORTHO05D000726 6.3e-08 60.8 72 41.7
MD08G1028400 Malus domestica HOM05D000089 ORTHO05D000726 6.3e-08 60.8 50 56.0
Sp2g07460 Schrenkiella parvula HOM05D000089 ORTHO05D000726 6.3e-08 60.8 55 49.1
SGA_v2.0_scaffold12G06298 Striga asiatica HOM05D000089 ORTHO05D000726 6.3e-08 60.8 60 43.3
Nn5g28645 Nelumbo nucifera HOM05D000089 ORTHO05D000726 1.1e-07 60.1 56 51.8
Potri.006G087200 Populus trichocarpa HOM05D000089 ORTHO05D000726 2.4e-07 58.9 57 54.4
Gohir.D07G152000 Gossypium hirsutum HOM05D000089 ORTHO05D000726 4.1e-07 58.2 68 47.1
TAR376G0495 Trochodendron aralioides HOM05D000089 ORTHO05D000726 4.1e-07 58.2 55 52.7
Gorai.001G174000 Gossypium raimondii HOM05D000089 ORTHO05D000726 5.4e-07 57.8 68 45.6
SEGI_22066 Sequoiadendron giganteum HOM05D000089 ORTHO05D000726 5.4e-07 57.8 59 45.8
CAN.G128.24 Capsicum annuum HOM05D000089 ORTHO05D000726 9.2e-07 57.0 70 40.0
ATR0568G084 Amborella trichopoda HOM05D000089 ORTHO05D023462 1.2e-06 56.6 48 47.9
Os01g0633500 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D000726 1.2e-06 56.6 63 44.4
Gohir.A07G145900 Gossypium hirsutum HOM05D000089 ORTHO05D000726 1.6e-06 56.2 67 46.3
Duzib138G0664 Durio zibethinus HOM05D000089 ORTHO05D000726 2.0e-06 55.8 59 45.8
Hma1.2p1_0203F.1_g086140 Hydrangea macrophylla HOM05D000089 ORTHO05D000726 2.0e-06 55.8 65 46.2
Peaxi162Scf00238g00125 Petunia axillaris HOM05D000089 ORTHO05D000726 2.0e-06 55.8 51 45.1
Rhsim06G0030600 Rhododendron simsii HOM05D000089 ORTHO05D000726 2.0e-06 55.8 65 46.2
vmacro21013 Vaccinium macrocarpon HOM05D000089 ORTHO05D000726 2.0e-06 55.8 71 43.7
Rhsim06G0030500 Rhododendron simsii HOM05D000089 ORTHO05D000726 2.7e-06 55.5 65 46.2
Actinidia33471 Actinidia chinensis HOM05D000089 ORTHO05D000726 3.5e-06 55.1 57 52.6
CSS0004973 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 4.5e-06 54.7 71 43.7
Rhsim06G0030400 Rhododendron simsii HOM05D000089 ORTHO05D000726 4.5e-06 54.7 65 43.1
CSS0016543 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000726 5.9e-06 54.3 66 42.4
Lj5g0004388 Lotus japonicus HOM05D000089 ORTHO05D000726 5.9e-06 54.3 75 40.0
Thecc.01G376900 Theobroma cacao HOM05D000089 ORTHO05D000726 5.9e-06 54.3 74 39.2
Thecc.01G377100 Theobroma cacao HOM05D000089 ORTHO05D000726 5.9e-06 54.3 71 38.0
Ciclev10030305m.g Citrus clementina HOM05D000089 ORTHO05D000726 7.8e-06 53.9 57 43.9
Duzib138G1582 Durio zibethinus HOM05D000089 ORTHO05D000726 7.8e-06 53.9 59 45.8
Nitab4.5_0000386g0260 Nicotiana tabacum HOM05D000089 ORTHO05D000726 7.8e-06 53.9 52 48.1
Potri.002G148000 Populus trichocarpa HOM05D000089 ORTHO05D000726 7.8e-06 53.9 57 49.1
Rhsim01G0148500 Rhododendron simsii HOM05D000089 ORTHO05D000726 7.8e-06 53.9 64 46.9
Sabra06G0066500 Salix brachista HOM05D000089 ORTHO05D000726 7.8e-06 53.9 57 47.4
TWI23G0924 Tripterygium wilfordii HOM05D000089 ORTHO05D000726 7.8e-06 53.9 57 45.6
vmacro13403 Vaccinium macrocarpon HOM05D000089 ORTHO05D000726 7.8e-06 53.9 57 49.1


User provided reference genes

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