Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 0.0e+00 1312.0 707 100.0
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-158 563.5 644 55.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.8e-147 525.0 709 50.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 7.3e-117 425.6 617 47.6
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.1e-109 401.7 628 46.5
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.4e-107 394.0 683 44.5
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 3.3e-101 373.6 574 48.8
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.6e-100 371.3 727 41.8
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.6e-95 354.8 640 42.2
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.1e-94 349.7 617 42.8
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.4e-90 337.0 660 41.1
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.2e-89 334.3 669 41.1
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 2.2e-89 334.3 640 42.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.9e-89 334.0 654 40.8
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 9.3e-88 328.9 556 43.3
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 4.6e-87 326.6 710 37.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 8.7e-86 322.4 640 40.0
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.5e-85 320.9 606 41.9
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.6e-84 318.2 577 43.3
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.0e-82 311.2 573 42.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.2e-80 303.9 738 36.7
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 4.2e-80 303.5 575 41.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 7.1e-80 302.8 594 40.7
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 2.1e-79 301.2 566 42.4
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.7e-79 300.8 500 46.8
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.5e-79 300.4 590 41.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 6.0e-79 299.7 662 38.4
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.8e-78 298.1 633 39.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 3.3e-77 293.9 564 42.2
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 9.6e-77 292.4 675 37.8
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.6e-76 291.6 571 42.6
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.4e-75 288.5 471 45.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.4e-75 287.7 582 39.3
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 5.3e-75 286.6 491 44.4
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.5e-74 285.0 652 37.7
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 4.5e-74 283.5 576 39.9
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.9e-73 280.8 630 36.2
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 7.1e-72 276.2 600 38.0
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 7.9e-71 272.7 508 41.1
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.3e-70 271.9 610 37.5
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.3e-70 271.2 634 38.5
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.1e-69 268.9 595 37.8
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 1.5e-69 268.5 615 38.0
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 5.7e-69 266.5 600 38.8
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.6e-68 265.0 627 36.7
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.8e-68 264.2 544 40.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 6.3e-68 263.1 620 37.6
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.8e-67 261.5 643 37.9
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 3.1e-67 260.8 638 36.2
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.2e-66 258.8 563 40.3
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 3.4e-66 257.3 602 37.5
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.7e-65 255.0 638 38.2
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.8e-65 253.8 634 35.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 3.2e-64 250.8 481 42.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.2e-64 250.8 651 35.5
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.2e-64 249.6 658 36.3
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 9.4e-64 249.2 557 38.6
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 9.4e-64 249.2 544 38.6
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.6e-63 248.4 646 36.1
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 2.1e-63 248.1 687 34.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.6e-63 247.3 588 38.1
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.9e-62 243.8 660 35.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.9e-62 243.8 601 36.4
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 6.7e-62 243.0 650 35.1
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.1e-61 242.3 493 42.8
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.5e-61 241.9 654 34.6
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.5e-61 241.1 642 35.7
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 4.3e-61 240.4 577 36.6
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 4.3e-61 240.4 617 37.3
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.4e-61 239.6 654 34.7
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.3e-60 238.8 583 36.5
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.7e-60 237.3 484 41.1
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 6.3e-60 236.5 597 35.5
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.1e-59 235.7 505 38.6
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.8e-59 235.0 522 39.3
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 9.1e-59 232.6 579 38.9
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 4.5e-58 230.3 501 38.3
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 2.9e-57 227.6 567 36.5
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 5.0e-57 226.9 300 52.0
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.9e-56 224.9 547 37.5
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 7.2e-56 223.0 489 39.3
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.2e-55 222.2 558 37.1
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.0e-54 219.2 670 34.2
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.1e-53 215.7 445 41.1
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 5.7e-53 213.4 470 41.1
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 7.4e-53 213.0 605 33.7
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 7.0e-51 206.5 323 47.1
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 2.2e-49 201.4 481 37.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 5.5e-48 196.8 479 37.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 9.7e-45 186.0 308 45.1
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 5.0e-41 173.7 470 33.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.9e-40 171.8 446 32.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 5.5e-40 170.2 475 33.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 4.7e-39 167.2 334 41.6
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 8.0e-39 166.4 460 34.1
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.0e-38 166.0 599 31.9
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.0e-38 166.0 422 35.5
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 5.2e-38 163.7 479 35.7
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 5.2e-38 163.7 545 32.1
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 6.8e-38 163.3 467 31.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-37 161.8 482 33.2
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 3.7e-36 157.5 454 31.7
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.8e-36 157.1 325 40.6
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.4e-35 155.6 454 30.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 1.8e-35 155.2 316 38.0
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.1e-35 154.1 465 32.3
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 5.3e-35 153.7 479 31.5
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 5.3e-35 153.7 479 31.5
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 3.5e-34 151.0 457 31.3
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 5.9e-34 150.2 457 31.1
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 5.9e-34 150.2 457 31.1
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 5.5e-32 143.7 471 31.0
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.2e-31 142.5 302 39.7
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.1e-31 141.7 471 31.2
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 5.2e-30 137.1 467 30.6
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.5e-29 135.6 298 40.9
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.0e-29 135.2 474 32.5
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 2.4e-27 128.3 232 44.0
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 2.7e-26 124.8 453 30.5
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.3e-25 122.5 502 30.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 2.6e-21 108.2 304 34.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 5.7e-21 107.1 304 34.5
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.4e-19 102.4 159 46.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.7e-18 98.2 379 28.0
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 4.5e-18 97.4 366 30.3
Nn7g38188 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.6e-08 63.9 68 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.2e-07 62.8 301 28.9
SEGI_03290 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 4.7e-07 60.8 194 30.4
Pp3c5_26610 Physcomitrium patens HOM05D031130 ORTHO05D019295 5.2e-06 57.4 106 38.7


User provided reference genes

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