Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 2.2e-46 188.7 102 100.0
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 7.5e-23 110.5 102 64.7
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 1.7e-22 109.4 83 67.5
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 3.7e-22 108.2 68 80.9
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 3.7e-22 108.2 68 77.9
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 8.3e-22 107.1 102 58.8
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 8.3e-22 107.1 68 79.4
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.8e-21 105.9 68 77.9
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.1e-21 105.1 69 78.3
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 5.4e-21 104.4 100 62.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.4e-21 104.4 68 75.0
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 5.4e-21 104.4 68 76.5
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 7.0e-21 104.0 68 75.0
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 9.2e-21 103.6 79 68.4
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 9.2e-21 103.6 68 77.9
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 1.2e-20 103.2 68 75.0
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.6e-20 102.8 68 73.5
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 2.0e-20 102.4 68 70.6
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.7e-20 102.1 67 71.6
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.5e-20 101.3 68 75.0
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 4.5e-20 101.3 68 75.0
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.9e-20 100.9 68 73.5
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.8e-20 100.5 96 58.3
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.3e-19 99.8 68 70.6
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 1.3e-19 99.8 68 69.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 1.7e-19 99.4 59 83.1
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 2.9e-19 98.6 68 70.6
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.8e-19 98.2 59 83.1
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.8e-19 98.2 68 73.5
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 5.0e-19 97.8 66 72.7
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 8.6e-19 97.1 69 68.1
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.1e-18 96.7 68 72.1
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.5e-18 96.3 60 75.0
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 2.5e-18 95.5 101 55.4
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.5e-18 95.5 68 72.1
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 2.5e-18 95.5 68 72.1
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 2.5e-18 95.5 102 51.0
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 7.3e-18 94.0 68 64.7
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 9.5e-18 93.6 68 70.6
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 1.4e-16 89.7 68 67.6
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 1.4e-16 89.7 68 66.2
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 1.4e-16 89.7 68 66.2
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 3.0e-16 88.6 68 63.2
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 4.0e-16 88.2 67 68.7
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 1.2e-15 86.7 66 62.1
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 2.6e-15 85.5 67 61.2
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 3.4e-15 85.1 67 64.2
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 5.8e-15 84.3 67 59.7
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 5.8e-15 84.3 68 61.8
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 7.5e-15 84.0 68 64.7
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 9.8e-15 83.6 67 62.7
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 1.3e-14 83.2 67 59.7
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 1.7e-14 82.8 67 58.2
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 2.2e-14 82.4 68 63.2
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 6.4e-14 80.9 61 63.9
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 1.1e-13 80.1 68 58.8
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 1.1e-13 80.1 68 58.8
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 1.4e-13 79.7 66 57.6
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 1.4e-13 79.7 64 59.4
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 2.4e-13 79.0 67 55.2
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 3.2e-13 78.6 66 60.6
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 4.1e-13 78.2 65 61.5
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 9.2e-13 77.0 64 56.2
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.6e-12 76.3 72 63.9
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 3.5e-12 75.1 65 56.9
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 6.0e-12 74.3 51 64.7
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 2.3e-11 72.4 66 57.6
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.3e-11 72.4 69 55.1
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 3.0e-11 72.0 68 55.9
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 8.6e-11 70.5 69 55.1
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.5e-10 69.7 69 53.6
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 1.9e-10 69.3 58 55.2
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 1.9e-10 69.3 64 50.0
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 5.6e-10 67.8 68 54.4
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 5.6e-10 67.8 67 47.8
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 2.1e-09 65.9 68 51.5
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 2.8e-09 65.5 63 47.6
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 2.6e-07 58.9 68 42.6
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 1.7e-06 56.2 72 38.9
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 4.9e-06 54.7 97 37.1
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 8.3e-06 53.9 50 56.0


User provided reference genes

Program Settings