Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 3.5e-266 921.0 442 100.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.5e-213 746.1 440 80.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 5.4e-211 737.6 441 77.3
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 7.1e-211 737.3 441 79.1
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.2e-211 736.9 441 78.9
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.7e-210 735.3 441 77.1
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.5e-210 734.9 439 76.5
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-207 726.1 440 78.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.1e-206 721.8 440 76.6
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 3.1e-206 721.8 439 78.4
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 3.8e-204 714.9 441 76.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 4.9e-204 714.5 438 76.3
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 8.4e-204 713.8 434 76.3
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.4e-203 711.1 443 75.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 5.4e-203 711.1 434 76.0
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.1e-202 709.1 435 76.8
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 3.5e-202 708.4 436 76.1
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.5e-202 708.4 438 75.3
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.5e-202 708.4 440 75.0
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 7.8e-202 707.2 453 74.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.3e-201 706.4 440 75.0
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.3e-201 705.7 440 74.8
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 5.1e-201 704.5 434 74.7
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 7.3e-200 700.7 440 73.9
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 9.6e-200 700.3 441 75.7
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.1e-199 699.1 445 74.8
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.8e-199 698.7 438 75.6
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 2.8e-199 698.7 439 73.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.1e-198 696.8 442 75.8
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-198 696.4 457 73.1
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 9.0e-198 693.7 439 74.3
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 9.0e-198 693.7 439 73.6
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 9.0e-198 693.7 439 73.6
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.5e-197 693.0 441 73.9
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.0e-197 692.6 435 73.6
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.6e-197 692.2 441 74.6
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.6e-197 692.2 434 75.6
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.6e-197 692.2 435 74.0
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 3.4e-197 691.8 436 74.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 3.4e-197 691.8 439 72.9
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 7.6e-197 690.6 435 74.7
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.9e-196 688.7 441 73.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 3.8e-196 688.3 439 72.9
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.9e-196 688.0 441 73.5
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 4.9e-196 688.0 428 75.9
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-195 686.4 439 72.4
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 3.2e-195 685.3 439 72.4
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 5.4e-195 684.5 439 72.9
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.1e-194 682.6 435 74.7
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.7e-194 682.2 418 75.6
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.8e-193 679.5 440 71.6
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.9e-193 678.3 392 80.4
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.5e-192 676.4 431 73.8
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.9e-192 676.0 444 71.8
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.3e-192 674.9 438 70.8
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 1.3e-191 673.3 441 69.2
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.6e-191 672.9 441 69.2
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.6e-191 672.9 436 70.6
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.7e-191 671.8 441 70.7
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 4.8e-191 671.4 466 68.0
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 4.8e-191 671.4 439 70.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 9.0e-190 667.2 440 70.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.4e-189 665.2 442 68.8
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 7.6e-189 664.1 439 69.2
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.2e-188 662.5 409 74.6
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 6.4e-188 661.0 441 69.4
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.1e-186 656.0 442 68.8
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 7.9e-186 654.1 442 69.0
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 7.9e-186 654.1 442 68.8
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.9e-185 651.7 442 68.6
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.9e-185 651.7 442 68.6
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.9e-185 651.7 442 68.6
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.7e-185 650.6 442 68.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.7e-185 650.6 442 68.1
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 2.5e-184 649.0 438 67.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 7.4e-184 647.5 390 76.7
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.7e-183 645.2 439 67.7
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.8e-182 642.9 439 66.7
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 2.5e-179 632.5 481 64.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 3.2e-179 632.1 442 69.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.4e-176 620.9 443 67.5
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.4e-174 615.9 444 67.6
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.9e-171 606.3 452 67.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 5.5e-171 604.7 446 66.1
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.6e-170 603.2 438 67.8
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.7e-170 602.4 440 62.5
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 6.7e-169 597.8 612 52.0
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 9.7e-168 594.0 457 65.6
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.4e-166 590.1 480 63.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.5e-163 579.3 471 64.3
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.5e-160 570.1 319 81.5
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 2.6e-157 559.3 423 66.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-154 550.1 503 58.3
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 3.9e-153 545.4 313 78.0
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.2e-151 539.7 342 70.5
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 8.2e-151 537.7 442 61.5
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.1e-150 537.3 438 56.4
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.8e-150 536.6 442 60.9
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 7.5e-144 514.6 428 57.5
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 3.5e-141 505.8 447 54.4
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.5e-141 505.4 356 69.7
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.1e-134 484.2 257 86.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 9.8e-128 461.1 259 82.2
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.6e-122 442.6 253 79.4
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.9e-118 430.3 463 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 6.6e-116 421.8 368 54.9
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.1e-114 416.8 237 78.9
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.6e-114 416.0 439 52.4
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.1e-113 414.5 238 80.7
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 5.4e-110 402.1 438 50.2
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.9e-95 353.2 234 68.8
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 8.7e-92 341.7 263 63.5
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.9e-88 328.2 173 83.8
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.1e-84 315.8 212 72.2
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.3e-83 312.0 209 72.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.0e-76 290.0 149 85.2
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.0e-76 290.0 149 85.2
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.9e-76 289.7 149 85.2
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 3.7e-74 283.1 144 86.1
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 2.5e-70 270.4 240 60.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.5e-67 261.2 453 36.6
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.3e-66 258.1 466 36.1
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 3.2e-62 243.4 440 36.6
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.3e-60 238.0 467 32.3
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.4e-59 232.3 186 61.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.4e-52 211.5 150 70.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.0e-44 185.3 447 31.5
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 8.8e-44 182.2 336 36.6
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 7.4e-43 179.1 95 78.9
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.8e-42 177.2 86 87.2
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 8.2e-42 175.6 163 58.3
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.6e-37 161.4 187 47.1
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 8.8e-36 155.6 85 77.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 2.0e-32 144.4 107 68.2
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 2.6e-32 144.1 106 68.9
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.0e-31 142.1 99 69.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.7e-31 141.4 103 70.9
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.5e-27 125.9 137 49.6
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.0e-21 105.9 270 31.9
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 2.8e-18 97.4 93 49.5
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.3e-14 83.6 41 78.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.4e-11 73.6 98 40.8
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.1e-09 68.9 33 87.9
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.1e-09 68.9 51 60.8
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 8.6e-07 59.3 211 25.1
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 9.5e-06 55.8 114 31.6


User provided reference genes

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