Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.3e-204 716.1 346 100.0
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 3.9e-79 299.3 162 91.4
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 4.4e-75 285.8 163 84.7
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 5.8e-75 285.4 159 86.8
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 2.9e-74 283.1 158 86.7
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 2.9e-74 283.1 158 86.7
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 3.7e-74 282.7 158 85.4
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.9e-73 280.4 163 82.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.4e-73 280.0 159 85.5
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 3.2e-73 279.6 163 82.8
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.2e-73 278.1 163 81.6
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 2.1e-72 276.9 163 81.6
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 4.6e-72 275.8 155 85.8
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 6.0e-72 275.4 163 81.6
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 7.8e-72 275.0 163 81.0
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.3e-71 274.2 159 82.4
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 1.7e-71 273.9 176 77.8
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 1.7e-71 273.9 163 81.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.0e-71 273.1 163 81.0
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 6.6e-71 271.9 163 81.6
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 6.6e-71 271.9 163 79.8
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 8.6e-71 271.6 163 79.8
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 8.6e-71 271.6 163 80.4
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.5e-70 270.0 164 79.9
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 3.3e-70 269.6 163 79.8
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 3.3e-70 269.6 155 83.2
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.3e-70 269.2 163 79.8
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 4.3e-70 269.2 159 80.5
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 4.3e-70 269.2 164 81.1
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 5.6e-70 268.9 163 81.0
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 5.6e-70 268.9 163 79.8
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 5.6e-70 268.9 162 80.2
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 7.3e-70 268.5 163 78.5
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 9.5e-70 268.1 159 79.2
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 9.5e-70 268.1 163 79.1
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.6e-69 267.3 168 77.4
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-69 266.5 157 80.3
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-69 266.5 157 80.3
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 3.6e-69 266.2 164 79.9
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 3.6e-69 266.2 157 81.5
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 4.7e-69 265.8 157 78.3
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 6.2e-69 265.4 158 79.7
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 6.2e-69 265.4 163 77.9
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 6.2e-69 265.4 162 81.5
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 6.2e-69 265.4 163 77.3
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 8.1e-69 265.0 161 81.4
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 8.1e-69 265.0 160 80.6
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.4e-68 264.2 157 81.5
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.4e-68 264.2 157 81.5
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.4e-68 264.2 157 81.5
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.8e-68 263.8 155 82.6
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 2.3e-68 263.5 158 78.5
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 4.0e-68 262.7 163 78.5
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 5.2e-68 262.3 158 80.4
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 6.8e-68 261.9 159 78.6
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.5e-67 260.8 158 79.7
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 2.6e-67 260.0 163 75.5
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.6e-67 260.0 164 74.4
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 4.4e-67 259.2 165 77.6
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 7.5e-67 258.5 157 77.7
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 7.5e-67 258.5 157 77.7
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 7.5e-67 258.5 158 77.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.3e-66 257.7 163 74.8
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.7e-66 257.3 163 77.3
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 1.7e-66 257.3 155 78.7
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 2.2e-66 256.9 163 77.9
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 4.9e-66 255.8 163 74.2
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 6.4e-66 255.4 161 75.2
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 6.4e-66 255.4 160 77.5
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 8.3e-66 255.0 163 77.3
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.1e-65 254.6 158 79.7
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.4e-65 254.2 163 76.1
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.9e-65 253.8 154 79.9
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 4.1e-65 252.7 153 77.1
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 5.4e-65 252.3 157 76.4
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 7.1e-65 251.9 160 77.5
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 9.2e-65 251.5 163 75.5
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 1.2e-64 251.1 158 77.2
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 1.2e-64 251.1 157 76.4
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.6e-64 250.8 163 77.3
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 1.6e-64 250.8 158 76.6
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.6e-64 250.8 161 75.2
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 2.7e-64 250.0 161 76.4
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 3.5e-64 249.6 158 78.5
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 6.0e-64 248.8 161 74.5
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 7.8e-64 248.4 165 74.5
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 7.8e-64 248.4 161 74.5
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.3e-63 247.7 204 62.7
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 2.3e-63 246.9 165 72.7
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 2.3e-63 246.9 159 73.0
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.3e-63 246.9 160 75.0
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 3.0e-63 246.5 165 72.7
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 3.0e-63 246.5 165 73.3
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 3.9e-63 246.1 163 73.6
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 3.9e-63 246.1 161 73.9
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 3.9e-63 246.1 159 72.3
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 6.6e-63 245.4 165 72.1
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 6.6e-63 245.4 160 75.6
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 8.6e-63 245.0 160 74.4
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 8.6e-63 245.0 160 74.4
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 8.6e-63 245.0 153 73.9
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 8.6e-63 245.0 165 73.3
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.1e-62 244.6 160 74.4
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.1e-62 244.6 161 74.5
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.1e-62 244.6 158 73.4
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.9e-62 243.8 160 73.1
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 2.5e-62 243.4 160 73.8
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 2.5e-62 243.4 161 72.7
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 2.5e-62 243.4 161 72.7
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 2.5e-62 243.4 158 75.3
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.3e-62 243.0 167 73.7
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 4.3e-62 242.7 157 73.2
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 5.6e-62 242.3 161 72.0
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 5.6e-62 242.3 161 72.0
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 7.3e-62 241.9 160 73.8
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 9.5e-62 241.5 166 71.7
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 9.5e-62 241.5 157 72.6
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 9.5e-62 241.5 141 83.7
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 9.5e-62 241.5 163 73.0
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 1.1e-60 238.0 156 72.4
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 1.1e-60 238.0 159 74.8
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 4.0e-60 236.1 210 60.0
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.5e-59 234.2 153 71.9
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.5e-59 234.2 157 73.9
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 3.4e-59 233.0 163 71.8
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 7.6e-59 231.9 138 80.4
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 1.7e-58 230.7 158 73.4
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 2.2e-58 230.3 156 71.8
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.4e-57 227.6 138 81.2
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.4e-57 227.6 140 75.7
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 4.2e-57 226.1 153 73.2
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 7.1e-57 225.3 166 66.9
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 9.2e-57 224.9 139 81.3
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 4.6e-56 222.6 142 79.6
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.3e-55 221.1 185 63.2
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 6.6e-55 218.8 134 78.4
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.5e-54 217.6 144 73.6
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 1.9e-54 217.2 158 68.4
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 1.9e-54 217.2 159 69.8
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 1.2e-53 214.5 150 72.7
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 6.2e-53 212.2 158 62.7
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.4e-52 210.3 162 62.3
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 3.1e-52 209.9 154 66.9
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 9.9e-51 204.9 157 61.1
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.7e-50 204.1 156 64.7
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 2.7e-48 196.8 160 61.2
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 2.3e-47 193.7 155 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 3.9e-47 193.0 161 60.9
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 7.3e-46 188.7 181 56.9
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 6.2e-45 185.7 155 60.0
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 8.1e-45 185.3 119 75.6
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 2.9e-42 176.8 156 59.0
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 6.0e-40 169.1 112 76.8
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 8.7e-39 165.2 155 60.0
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 1.1e-38 164.9 152 54.6
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 5.6e-38 162.5 154 53.9
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 1.4e-36 157.9 112 70.5
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.4e-35 153.3 92 78.3
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.5e-30 137.9 81 79.0
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 5.6e-30 136.0 162 42.0
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 2.8e-29 133.7 163 42.3
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 5.8e-27 125.9 79 75.9
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.3e-21 108.2 72 68.1
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 2.2e-21 107.5 73 72.6
TAR633G1996 Trochodendron aralioides HOM05D002010 ORTHO05D001602 3.7e-21 106.7 60 80.0
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 6.3e-21 105.9 82 64.6
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 3.8e-18 96.7 124 47.6
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 8.5e-18 95.5 87 58.6
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 4.2e-17 93.2 117 45.3
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 9.4e-17 92.0 85 58.8
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 1.6e-16 91.3 79 60.8
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 4.6e-16 89.7 47 83.0
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 3.3e-14 83.6 67 62.7
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 4.8e-13 79.7 59 57.6
TAR629G2840 Trochodendron aralioides HOM05D002010 ORTHO05D001602 4.8e-13 79.7 58 60.3
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 2.4e-12 77.4 169 33.7
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 9.1e-12 75.5 44 81.8
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 1.1e-09 68.6 77 45.5
TAR622G0371 Trochodendron aralioides HOM05D002010 ORTHO05D001602 7.2e-09 65.9 60 43.3
TAR625G0747 Trochodendron aralioides HOM05D002010 ORTHO05D001602 1.6e-08 64.7 60 45.0
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 1.0e-07 62.0 57 57.9
TAR636G0802 Trochodendron aralioides HOM05D002010 ORTHO05D001602 3.3e-06 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 7.4e-06 55.8 29 86.2
TAR325G0002 Trochodendron aralioides HOM05D002010 ORTHO05D001602 9.7e-06 55.5 53 39.6
TAR622G0226 Trochodendron aralioides HOM05D002010 ORTHO05D001602 9.7e-06 55.5 37 56.8


User provided reference genes

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