Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.9e-198 695.7 356 100.0
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.3e-150 535.4 351 80.3
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.2e-139 500.4 344 74.4
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 8.4e-138 494.2 344 74.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 3.3e-134 482.3 344 74.1
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 4.3e-134 481.9 349 71.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.6e-134 481.5 344 73.5
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 9.0e-132 474.2 345 72.5
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.0e-131 473.0 345 72.2
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.0e-130 470.7 347 72.6
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.1e-129 467.2 351 69.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.9e-129 466.5 347 70.0
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.7e-128 462.6 345 71.3
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.0e-127 460.7 346 71.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.8e-127 459.9 342 71.6
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.3e-127 459.5 343 70.0
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 8.7e-127 457.6 346 71.4
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.5e-126 456.8 346 71.1
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 5.7e-126 454.9 344 69.2
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.3e-125 453.8 344 70.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.3e-125 453.8 352 70.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.6e-125 453.4 343 69.1
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.1e-124 449.1 354 68.6
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 5.3e-124 448.4 345 67.8
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 6.9e-124 448.0 347 70.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 9.0e-124 447.6 344 69.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 9.0e-124 447.6 344 69.8
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 4.5e-123 445.3 344 68.3
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.0e-122 444.1 334 70.4
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.9e-122 442.6 343 68.5
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 8.4e-122 441.0 347 68.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.4e-121 440.3 345 68.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.2e-121 439.1 349 68.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-121 439.1 343 68.5
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.2e-120 437.2 344 68.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.7e-120 436.0 348 70.4
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.5e-118 430.3 357 66.7
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.5e-118 430.3 350 66.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.3e-118 429.1 344 67.4
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.3e-117 427.2 357 66.4
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.4e-116 423.7 344 67.7
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-116 423.7 357 66.1
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 4.1e-116 422.2 344 67.2
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.7e-114 416.8 346 66.2
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.9e-114 416.0 346 63.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.9e-114 416.0 358 64.5
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 8.5e-114 414.5 346 64.7
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.4e-113 413.7 345 67.0
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.9e-113 413.3 347 65.4
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.2e-113 412.5 345 67.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.5e-113 411.8 343 65.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 7.2e-113 411.4 344 65.7
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.4e-113 411.0 346 64.7
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.2e-112 410.6 344 63.4
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.2e-112 410.6 344 65.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.7e-112 409.5 349 65.6
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.7e-112 409.5 344 63.4
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.7e-112 409.5 408 57.4
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 3.6e-112 409.1 403 58.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.1e-112 408.3 412 57.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 6.1e-112 408.3 345 63.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-111 406.4 343 64.4
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.7e-110 401.7 343 63.8
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 7.4e-110 401.4 347 65.1
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.3e-109 400.6 344 65.7
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.8e-109 399.4 358 65.1
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.8e-109 399.4 346 64.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.7e-109 399.1 344 63.1
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-108 396.7 388 59.3
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.1e-108 396.0 344 63.1
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 9.1e-108 394.4 344 64.0
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.0e-107 393.3 346 64.7
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 5.9e-107 391.7 347 63.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.0e-106 391.0 352 58.2
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-106 391.0 344 62.8
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.2e-106 389.8 345 63.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 5.0e-106 388.7 344 63.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.4e-105 387.1 349 59.3
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.5e-105 386.3 348 63.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 4.2e-105 385.6 344 64.5
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 7.2e-105 384.8 359 61.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.1e-104 383.3 345 61.7
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.7e-104 382.9 345 61.7
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 4.7e-104 382.1 348 62.1
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 7.9e-104 381.3 356 58.1
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.0e-103 379.4 344 61.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.9e-103 379.0 349 61.0
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-102 377.5 351 59.5
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.2e-101 373.2 345 60.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.2e-101 373.2 345 59.7
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.8e-101 372.9 345 60.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.8e-100 370.2 344 60.8
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.8e-100 370.2 344 60.2
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 4.1e-100 369.0 344 59.3
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.3e-100 368.6 344 59.0
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.3e-98 364.0 329 62.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.7e-98 363.6 346 61.8
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.9e-98 362.8 343 57.7
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.9e-98 362.8 347 61.1
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 5.0e-98 362.1 348 57.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 5.0e-98 362.1 323 61.6
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-97 360.9 349 59.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.5e-97 360.5 348 58.9
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.2e-97 359.0 344 58.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 4.2e-97 359.0 351 57.5
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.6e-96 355.9 349 57.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.0e-95 354.4 345 58.0
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.8e-95 353.6 345 58.8
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-95 353.6 337 59.9
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 6.7e-95 351.7 346 56.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.1e-94 350.9 345 57.7
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.4e-94 349.0 345 57.1
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 4.4e-94 349.0 345 60.3
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.3e-93 347.4 347 56.2
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.2e-93 344.7 280 65.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 9.1e-92 341.3 322 61.8
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 3.5e-91 339.3 347 55.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 3.5e-91 339.3 350 54.3
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.9e-90 336.3 350 53.7
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 3.8e-90 335.9 269 68.4
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.7e-88 329.7 350 56.3
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.6e-88 329.3 343 56.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 4.7e-88 328.9 343 56.0
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.7e-88 328.9 343 56.3
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 8.0e-88 328.2 343 54.5
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.0e-87 327.8 349 53.9
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-87 326.6 350 54.6
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-86 323.6 356 53.1
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.0e-86 323.6 253 70.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 4.4e-86 322.4 356 53.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.7e-85 320.5 350 54.0
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-84 317.4 344 53.8
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.4e-84 317.4 344 53.8
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-84 317.0 349 53.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.8e-84 317.0 350 53.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 5.4e-84 315.5 344 53.5
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-84 315.1 342 54.1
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 7.0e-84 315.1 342 54.1
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 4.5e-83 312.4 348 52.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.1e-80 303.5 283 62.2
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.0e-79 299.7 246 65.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.7e-67 260.0 339 49.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 6.6e-66 255.4 342 50.9
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.3e-65 251.9 208 66.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-64 251.1 251 57.4
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.3e-50 204.5 348 39.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.7e-42 177.6 350 37.1
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 6.2e-40 169.1 398 34.7
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.0e-34 150.2 255 40.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.0e-26 123.6 156 48.7
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.5e-25 121.3 155 51.0
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.5e-22 109.8 243 35.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.9e-21 107.1 164 39.6
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 9.6e-17 92.0 91 57.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 6.5e-13 79.3 171 35.7
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.0e-10 72.0 354 26.6
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 6.7e-10 69.3 186 28.5
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.5e-09 67.4 180 33.3
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 9.0e-07 58.9 353 23.5
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 5.9e-06 56.2 221 24.4


User provided reference genes

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