Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-193 679.9 339 100.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.0e-168 595.9 318 92.1
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.1e-163 580.1 337 85.5
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 9.1e-158 560.5 336 82.7
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.5e-157 558.5 326 85.0
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 2.2e-156 555.8 341 80.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.8e-156 555.1 341 80.9
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 3.8e-156 555.1 344 80.2
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 5.0e-156 554.7 343 81.6
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.9e-155 552.7 344 80.2
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.2e-155 552.0 325 84.6
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.5e-155 551.2 306 88.6
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 7.2e-155 550.8 322 82.9
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 9.4e-155 550.4 326 83.1
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.6e-154 548.5 344 79.9
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.7e-154 548.1 344 79.7
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.1e-154 547.7 345 80.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-153 546.2 324 82.1
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 2.3e-153 545.8 316 85.8
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.0e-153 545.0 325 81.8
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 8.8e-153 543.9 326 81.3
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 8.8e-153 543.9 351 78.6
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.5e-152 543.1 324 82.7
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.5e-152 543.1 343 78.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.0e-152 542.7 326 81.3
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 4.4e-152 541.6 345 78.6
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-151 540.0 357 77.3
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.7e-151 538.5 330 80.0
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 8.2e-151 537.3 332 80.1
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.8e-150 536.2 358 75.1
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 4.1e-150 535.0 340 78.8
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 4.1e-150 535.0 325 82.5
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 4.1e-150 535.0 340 80.0
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 5.3e-150 534.6 358 76.5
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-149 533.5 348 78.2
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.6e-149 533.1 326 80.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 3.5e-149 531.9 348 77.3
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 4.5e-149 531.6 361 75.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 5.9e-149 531.2 327 79.5
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.7e-149 530.8 331 79.2
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 7.7e-149 530.8 343 78.7
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.3e-148 530.0 340 79.4
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.7e-148 529.6 295 86.8
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.9e-148 528.9 327 79.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 6.5e-148 527.7 337 78.3
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 6.5e-148 527.7 346 77.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 6.5e-148 527.7 322 81.1
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.5e-148 527.7 343 78.1
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-147 526.9 327 79.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.5e-147 526.6 341 77.4
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.5e-147 525.8 326 79.1
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.2e-147 525.4 328 79.0
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.2e-147 525.4 341 77.4
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 7.2e-147 524.2 325 79.4
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 7.2e-147 524.2 338 79.3
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 9.4e-147 523.9 326 79.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.2e-146 523.5 327 78.9
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.2e-146 523.5 339 79.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.7e-146 522.3 328 78.7
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.7e-146 522.3 308 81.8
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.7e-146 522.3 333 80.2
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 4.7e-146 521.5 344 77.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 8.0e-146 520.8 402 68.4
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.8e-145 519.6 339 77.9
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.3e-145 519.2 296 83.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 3.0e-145 518.8 345 77.1
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 4.0e-145 518.5 346 76.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.8e-145 517.7 351 74.6
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.8e-145 517.7 351 74.6
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 8.8e-145 517.3 326 78.2
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 2.6e-144 515.8 336 75.6
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 4.4e-144 515.0 347 74.6
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.3e-143 513.5 299 82.6
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.2e-143 512.7 350 74.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.8e-143 512.3 324 78.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.8e-143 512.3 318 79.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.8e-143 512.3 325 78.5
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 6.3e-143 511.1 315 80.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 6.3e-143 511.1 385 69.9
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 8.3e-143 510.8 325 78.2
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.8e-142 509.6 324 78.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 7.0e-142 507.7 325 77.8
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 7.0e-142 507.7 305 83.3
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 9.1e-142 507.3 324 78.1
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.2e-141 506.9 353 73.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.6e-141 506.5 283 85.9
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.5e-141 505.4 291 82.8
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.5e-139 500.0 345 72.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.3e-139 498.8 312 77.9
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 7.2e-139 497.7 312 76.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.2e-138 496.9 324 78.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.1e-138 496.1 355 70.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 4.7e-138 495.0 340 73.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 2.3e-137 492.7 310 79.0
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 4.0e-137 491.9 340 74.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 6.8e-137 491.1 344 73.5
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 6.8e-137 491.1 336 74.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.8e-135 485.7 324 75.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 7.0e-134 481.1 270 85.6
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.7e-132 476.5 296 77.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.8e-132 475.3 270 85.2
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.2e-130 470.3 272 83.1
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.8e-129 466.5 315 75.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.5e-128 463.4 292 81.2
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.8e-128 461.5 356 69.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.9e-126 456.4 337 70.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.0e-124 450.7 303 76.2
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.3e-123 445.7 293 75.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 5.6e-123 444.9 326 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.1e-121 440.7 286 72.0
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.4e-120 435.3 287 74.2
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.2e-118 429.1 284 70.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 5.4e-118 428.3 313 72.5
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.0e-116 424.1 255 81.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.3e-116 423.7 292 70.2
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 5.6e-115 418.3 251 82.1
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.2e-112 410.6 256 79.3
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.2e-104 384.0 297 69.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.1e-98 363.2 307 63.8
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.1e-93 346.7 228 76.8
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 2.1e-90 336.7 219 78.5
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.2e-87 326.6 235 74.9
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 7.4e-67 258.5 153 78.4
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.4e-65 253.4 338 47.3
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.5e-64 250.8 190 71.1
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.7e-64 248.4 139 84.2
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.9e-63 246.5 139 86.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.9e-54 217.2 132 75.8
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.1e-53 212.2 135 78.5
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 7.4e-51 205.3 108 87.0
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 3.7e-50 203.0 108 84.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.2e-39 167.2 277 43.0
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.5e-38 163.7 129 59.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 3.2e-38 163.3 112 69.6
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 9.7e-35 151.8 307 32.6
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 5.3e-33 146.0 117 62.4
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 1.4e-25 121.3 121 56.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.2e-24 118.2 105 58.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 3.8e-23 113.2 289 31.8
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.3e-22 110.2 86 61.6
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.5e-22 108.6 71 71.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 8.9e-20 102.1 92 60.9
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-19 101.7 93 61.3
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.4e-17 94.7 53 77.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.2e-17 93.6 52 82.7
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 3.2e-17 93.6 53 84.9
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-16 91.7 53 79.2
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.6e-16 91.3 81 53.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.2e-11 75.1 37 83.8
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.0e-07 62.0 31 93.5
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.1e-06 58.5 57 56.1


User provided reference genes

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