Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.7e-101 370.5 195 100.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.6e-67 258.1 195 75.9
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 5.2e-65 251.5 197 72.6
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.5e-61 238.8 203 70.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 7.8e-61 237.7 198 69.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.1e-57 225.7 200 66.5
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.9e-54 216.5 199 65.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 4.3e-51 205.3 200 64.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.7e-50 201.8 198 64.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.0e-48 196.4 200 60.0
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.4e-48 195.3 201 60.7
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 5.8e-48 194.9 203 59.1
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.9e-47 191.8 204 63.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.3e-47 191.0 200 59.0
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-46 190.7 203 61.6
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.4e-46 189.5 202 59.9
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.6e-45 185.3 203 58.1
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.3e-44 183.7 200 58.5
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 8.6e-44 181.0 206 56.8
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 8.6e-44 181.0 201 59.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 7.3e-43 177.9 213 54.9
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.7e-42 175.3 201 61.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.0e-41 172.2 203 57.6
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.0e-41 172.2 203 57.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.0e-41 172.2 198 57.6
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 6.8e-41 171.4 224 50.9
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 8.9e-41 171.0 201 58.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.0e-40 169.9 200 58.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 7.6e-40 167.9 223 53.4
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.4e-39 164.9 195 56.4
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.4e-39 164.5 203 58.1
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-38 163.7 208 55.8
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.9e-38 163.3 200 56.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.4e-38 162.9 161 60.9
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.2e-38 162.5 202 53.5
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.7e-37 159.5 201 55.2
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 6.0e-37 158.3 203 55.7
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 7.8e-37 157.9 213 53.1
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 3.0e-36 156.0 202 53.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.0e-36 156.0 196 55.6
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 6.6e-36 154.8 205 55.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 6.6e-36 154.8 205 55.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.9e-35 153.3 212 52.8
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.9e-35 153.3 209 52.6
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.5e-35 152.9 205 55.1
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.6e-34 150.2 206 51.5
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.6e-34 149.1 212 49.5
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 8.1e-34 147.9 202 51.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.4e-33 147.1 211 49.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-33 146.4 211 54.0
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.2e-33 145.2 202 55.4
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 6.9e-33 144.8 205 53.7
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.9e-33 144.8 198 51.5
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.4e-32 142.5 209 50.7
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.4e-32 142.1 211 52.6
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.4e-32 142.1 210 51.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.6e-32 141.4 201 56.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.7e-31 140.2 211 50.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.9e-31 139.4 219 51.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.8e-31 139.0 201 49.8
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 3.8e-31 139.0 210 50.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 6.4e-31 138.3 206 51.0
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 8.4e-31 137.9 204 49.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-30 136.7 204 49.5
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.4e-30 136.3 203 48.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.4e-30 136.3 203 48.3
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.2e-29 134.0 217 49.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-29 133.3 218 49.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 3.5e-29 132.5 215 49.8
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.5e-29 132.5 191 53.9
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.6e-29 132.1 215 49.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.8e-29 131.3 227 47.6
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.7e-28 130.2 199 48.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 3.9e-28 129.0 131 63.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.5e-27 127.1 205 49.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.5e-27 126.3 212 45.3
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.3e-26 124.0 212 46.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.8e-26 122.9 226 46.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.6e-26 122.5 209 45.5
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.8e-26 122.1 208 45.2
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 8.1e-26 121.3 138 56.5
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 8.1e-26 121.3 214 43.0
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.8e-25 120.2 207 47.8
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.4e-25 119.8 211 44.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.4e-25 119.8 207 44.4
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 5.3e-25 118.6 214 46.7
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.3e-25 118.6 208 42.8
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.5e-24 117.1 212 44.3
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.5e-24 115.5 206 44.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.5e-24 115.5 207 44.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.5e-24 115.5 212 44.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 5.8e-24 115.2 208 43.8
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 5.8e-24 115.2 194 46.9
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.8e-24 115.2 141 53.2
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 7.6e-24 114.8 208 45.7
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.9e-24 114.4 166 50.6
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.7e-23 113.6 196 43.9
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-23 113.6 208 43.3
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-23 113.6 208 43.3
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.7e-23 113.6 210 43.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.2e-23 113.2 202 44.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.9e-23 112.8 206 43.2
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.4e-23 111.7 208 43.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.4e-23 111.7 208 43.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.9e-22 110.2 210 41.9
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.2e-22 109.4 201 40.8
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.2e-22 109.4 202 43.6
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.2e-22 109.0 196 44.4
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 4.2e-22 109.0 117 61.5
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.5e-21 105.9 206 41.3
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.5e-21 105.9 206 41.3
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.5e-21 105.9 141 52.5
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 6.0e-21 105.1 206 41.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-20 104.4 201 41.3
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-20 103.6 208 41.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-20 103.2 206 40.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 6.7e-20 101.7 206 39.8
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 6.7e-20 101.7 207 42.0
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.7e-20 101.7 193 45.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 8.7e-20 101.3 175 46.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 8.7e-20 101.3 200 41.5
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.7e-20 101.3 212 42.9
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.5e-19 99.8 207 41.5
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.3e-19 99.4 206 39.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.3e-19 99.0 206 39.3
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 5.6e-19 98.6 150 49.3
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 7.4e-19 98.2 200 44.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 9.6e-19 97.8 206 38.8
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.6e-18 97.1 152 50.0
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.6e-18 97.1 209 41.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-18 95.5 164 43.9
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 4.8e-18 95.5 206 38.8
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-17 94.4 207 40.1
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.8e-17 93.6 151 45.7
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.8e-17 93.6 179 43.0
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 3.1e-17 92.8 204 40.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-17 92.8 208 42.3
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-16 90.9 201 39.3
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.2e-16 90.9 147 44.9
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-16 90.5 177 39.5
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.0e-16 90.1 197 40.6
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-16 89.4 176 38.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 4.5e-16 89.0 121 49.6
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 9.9e-16 87.8 176 40.3
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 2.2e-15 86.7 212 38.2
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.2e-15 86.7 209 36.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 8.4e-15 84.7 178 39.9
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 8.4e-15 84.7 124 48.4
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 8.4e-15 84.7 168 41.1
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-14 83.2 205 38.0
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.4e-14 83.2 126 47.6
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 7.1e-14 81.6 204 37.3
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.1e-14 81.6 90 56.7
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.1e-14 81.6 213 35.2
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-13 80.9 180 40.0
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.2e-13 80.9 180 40.0
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 6.0e-13 78.6 135 45.2
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 7.9e-13 78.2 209 37.3
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 7.9e-13 78.2 210 38.1
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.3e-12 77.4 191 37.2
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.8e-12 77.0 215 38.6
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.0e-12 76.3 162 37.7
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.1e-12 75.5 204 37.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 8.7e-12 74.7 102 55.9
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.3e-11 72.8 200 37.0
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.4e-11 71.6 206 34.0
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 2.8e-10 69.7 204 34.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 8.2e-10 68.2 94 45.7
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 8.2e-10 68.2 108 50.9
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.9e-09 65.1 122 38.5
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.4e-08 62.8 198 35.9
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 5.8e-08 62.0 221 35.3
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 1.0e-07 61.2 102 46.1
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.7e-07 60.5 121 41.3
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 4.9e-07 58.9 49 61.2
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 4.9e-07 58.9 165 37.6
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.9e-07 58.9 161 32.9
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 8.4e-07 58.2 83 45.8
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 8.4e-07 58.2 185 36.8
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.5e-06 56.6 200 34.0


User provided reference genes

Program Settings