Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.5e-261 904.8 435 100.0
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.7e-217 759.2 435 83.7
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 3.7e-188 661.8 444 70.9
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.3e-177 625.9 449 66.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.4e-173 611.7 444 64.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 7.0e-171 604.4 444 63.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.7e-170 602.4 444 65.1
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.5e-170 602.1 435 66.2
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.5e-170 602.1 444 64.6
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 6.6e-169 597.8 447 64.9
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.6e-169 597.8 444 63.5
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 8.6e-169 597.4 444 63.3
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-168 595.9 444 65.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.2e-167 593.6 444 63.5
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.3e-166 589.3 444 63.3
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 8.9e-166 587.4 443 64.3
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.2e-165 587.0 444 64.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.5e-165 586.6 442 63.3
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.0e-165 586.3 444 61.9
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.6e-165 585.9 444 63.5
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.4e-165 585.5 444 62.6
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 4.4e-165 585.1 444 61.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.7e-164 583.2 444 63.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.7e-164 583.2 442 62.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.9e-164 582.4 444 60.6
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 6.4e-164 581.3 444 61.3
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.9e-163 579.7 444 61.7
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.4e-163 579.3 442 62.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 4.1e-163 578.6 442 62.2
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.2e-162 577.0 475 60.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.2e-162 577.0 447 61.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.1e-162 576.2 446 63.2
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 4.6e-162 575.1 447 61.3
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.3e-161 573.5 444 61.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.7e-161 573.2 444 61.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.1e-160 570.5 444 61.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.3e-160 568.5 444 61.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 2.1e-159 566.2 444 60.8
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.1e-159 566.2 444 61.5
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 2.8e-159 565.8 442 60.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.1e-158 563.9 447 60.4
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.4e-158 563.5 442 60.9
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.4e-158 562.8 456 57.9
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.0e-158 562.0 444 60.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.0e-158 562.0 444 60.8
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 6.8e-158 561.2 444 59.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.5e-157 560.1 444 61.7
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 7.6e-157 557.8 443 60.3
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.8e-156 555.4 446 60.8
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 4.9e-156 555.1 445 61.1
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.2e-155 552.4 444 58.8
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.6e-154 550.1 446 59.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.0e-154 548.1 444 60.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 5.1e-153 545.0 444 59.7
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 5.1e-153 545.0 489 55.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.5e-152 543.5 447 59.5
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.5e-152 542.7 445 59.8
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 3.3e-152 542.3 444 58.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 9.6e-152 540.8 444 59.0
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.8e-151 539.3 442 57.9
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 6.2e-151 538.1 444 59.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.1e-150 537.3 445 59.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.4e-150 537.0 445 59.3
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.4e-150 536.2 443 58.7
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.0e-150 535.4 445 59.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 6.9e-150 534.6 444 58.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 9.9e-149 530.8 418 61.0
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.3e-148 530.4 444 57.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.7e-148 530.0 444 57.2
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.2e-148 529.6 444 56.8
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.1e-147 527.3 445 56.6
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.1e-146 523.1 437 58.1
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.1e-146 523.1 437 58.1
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.1e-146 523.1 444 57.9
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 7.8e-146 521.2 445 56.9
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-145 520.8 436 57.8
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.0e-145 520.8 436 57.8
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.9e-145 518.8 418 60.5
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 6.6e-145 518.1 365 68.5
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 8.7e-145 517.7 440 57.0
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.0e-142 508.8 441 55.3
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.4e-141 505.8 459 54.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.5e-141 505.4 440 56.6
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 4.5e-141 505.4 382 63.9
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.6e-141 504.6 437 58.6
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.9e-140 502.7 401 60.6
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.1e-139 500.7 383 63.2
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 7.1e-139 498.0 446 54.5
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.2e-138 497.3 444 57.2
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.3e-137 493.8 436 58.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.7e-137 491.5 440 55.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.9e-136 490.0 365 62.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 2.2e-132 476.5 445 53.0
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.8e-132 475.7 443 53.7
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.8e-132 475.7 437 53.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.9e-132 475.3 444 54.5
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.1e-131 474.2 381 59.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-131 473.0 367 64.3
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.3e-129 466.5 382 58.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 5.1e-129 465.3 440 53.2
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.9e-128 463.4 435 55.2
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 7.4e-128 461.5 389 57.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.3e-127 460.7 465 50.5
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.0e-124 451.1 441 51.2
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-124 451.1 441 51.2
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.0e-124 451.1 441 51.2
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.2e-123 446.0 460 49.3
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.1e-122 443.4 418 56.2
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 3.1e-118 429.5 408 52.9
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.9e-116 422.9 314 62.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.9e-114 414.8 436 49.5
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 8.2e-111 404.8 444 47.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.0e-101 373.6 429 45.9
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 3.9e-97 359.4 445 45.2
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 4.4e-96 355.9 440 43.0
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 3.1e-94 349.7 439 42.8
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.6e-93 347.4 431 42.7
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-90 337.8 308 53.9
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.6e-88 330.1 370 50.0
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 7.5e-88 328.6 309 54.0
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 7.5e-88 328.6 411 42.3
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 7.7e-85 318.5 445 41.6
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-84 318.2 442 41.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.8e-84 316.2 231 65.8
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.2e-83 313.2 382 44.8
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.3e-79 298.9 243 58.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.4e-72 276.6 184 69.6
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 8.3e-71 271.9 247 57.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.8e-69 265.4 315 47.6
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 5.0e-60 236.1 518 31.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.6e-59 232.6 475 33.9
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.3e-52 210.7 163 62.6
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-49 201.8 142 67.6
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.6e-37 161.4 137 57.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.5e-35 154.1 488 29.3
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 4.4e-32 143.3 102 61.8
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 9.0e-25 119.0 100 57.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.6e-21 108.2 72 65.3
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 5.3e-17 93.2 92 53.3
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 7.1e-14 82.8 346 23.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-13 81.6 69 56.5
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 9.0e-09 65.9 127 33.1
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 3.4e-08 63.9 148 35.8
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.3e-07 62.0 146 34.2
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.7e-07 61.6 123 37.4
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 2.2e-07 61.2 145 34.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.9e-07 60.8 145 34.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 3.8e-07 60.5 120 36.7
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 5.0e-07 60.1 163 32.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 6.5e-07 59.7 147 34.7
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 8.4e-07 59.3 121 37.2
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 8.4e-07 59.3 146 30.8
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 8.4e-07 59.3 119 35.3
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.4e-07 59.3 120 37.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.1e-06 58.9 144 32.6
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.1e-06 58.9 123 36.6
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.1e-06 58.9 126 34.9
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.1e-06 58.9 114 33.3
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.4e-06 58.5 120 37.5
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.4e-06 58.5 120 37.5
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.4e-06 58.5 120 37.5
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.4e-06 58.5 120 37.5
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.9e-06 58.2 146 32.2
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.9e-06 58.2 119 35.3
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.9e-06 58.2 120 37.5
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.9e-06 58.2 149 32.9
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.9e-06 58.2 120 37.5
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.9e-06 58.2 120 33.3
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.5e-06 57.8 124 37.1
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.5e-06 57.8 120 36.7
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.5e-06 57.8 120 36.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.2e-06 57.4 120 36.7
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.2e-06 57.4 145 34.5
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 3.2e-06 57.4 121 36.4
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.2e-06 57.0 145 33.1
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 4.2e-06 57.0 120 35.8
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 4.2e-06 57.0 148 34.5
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.5e-06 56.6 120 36.7


User provided reference genes

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