Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.6e-172 608.2 318 100.0
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.1e-104 384.0 288 72.6
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 1.4e-88 330.5 249 71.1
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.2e-82 310.8 285 59.6
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 4.5e-82 308.9 286 57.7
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 1.3e-81 307.4 288 59.0
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.8e-81 305.8 282 59.9
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 4.2e-80 302.4 279 58.8
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 2.7e-79 299.7 288 57.6
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 3.5e-79 299.3 290 56.6
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.9e-78 295.8 288 56.2
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 3.9e-78 295.8 287 58.5
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 8.7e-78 294.7 292 54.5
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 4.3e-77 292.4 241 63.1
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 4.3e-77 292.4 310 53.2
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 7.4e-77 291.6 288 56.2
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.6e-76 290.4 288 56.2
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 1.6e-76 290.4 280 57.5
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.2e-76 290.0 288 56.6
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 2.8e-76 289.7 286 58.0
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 6.3e-76 288.5 281 55.2
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.3e-76 288.5 288 55.6
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 8.2e-76 288.1 241 61.8
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.1e-75 287.7 286 54.2
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 3.1e-75 286.2 283 56.5
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 4.1e-75 285.8 284 54.2
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 5.3e-75 285.4 287 56.8
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 6.9e-75 285.0 247 61.1
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.2e-74 284.3 255 60.0
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 4.5e-74 282.3 289 54.7
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 4.5e-74 282.3 284 52.8
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 7.7e-74 281.6 288 53.8
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.3e-73 280.8 283 56.2
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 2.2e-73 280.0 253 61.7
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 2.9e-73 279.6 286 53.8
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 3.8e-73 279.3 288 53.8
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 3.8e-73 279.3 270 57.8
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 5.0e-73 278.9 243 61.3
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 8.5e-73 278.1 286 53.1
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.9e-72 276.9 286 53.8
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 1.9e-72 276.9 281 54.4
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.9e-72 276.9 293 52.9
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 3.2e-72 276.2 283 54.8
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 5.5e-72 275.4 283 54.1
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 9.4e-72 274.6 281 54.4
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 9.4e-72 274.6 288 50.7
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 1.6e-71 273.9 244 55.7
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 2.1e-71 273.5 243 63.4
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 2.7e-71 273.1 295 51.2
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 6.1e-71 271.9 283 51.6
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.4e-70 270.8 288 52.8
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 1.4e-70 270.8 283 54.4
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 1.8e-70 270.4 244 56.6
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 6.7e-70 268.5 286 54.2
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 4.3e-69 265.8 250 58.0
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.3e-68 264.2 282 52.1
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 1.7e-68 263.8 288 53.8
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 8.2e-68 261.5 290 52.1
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 8.2e-68 261.5 281 52.0
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 1.1e-67 261.2 236 56.8
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.4e-67 260.0 238 56.7
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 3.1e-67 259.6 228 57.5
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 4.1e-67 259.2 283 50.5
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.0e-66 256.9 244 52.9
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.0e-65 254.6 241 57.3
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.3e-65 254.2 241 57.3
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 3.8e-65 252.7 283 50.5
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 1.9e-64 250.4 241 56.8
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 4.2e-64 249.2 284 51.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.5e-64 248.8 241 56.4
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 9.4e-64 248.1 269 50.6
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.7e-63 246.5 254 55.1
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 7.9e-63 245.0 281 52.0
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.0e-62 244.6 282 49.6
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.3e-62 243.4 282 50.0
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 3.0e-62 243.0 282 50.7
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 7.4e-61 238.4 282 48.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 9.7e-61 238.0 283 48.4
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 9.7e-61 238.0 283 48.4
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.8e-60 236.5 295 49.2
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 3.7e-60 236.1 284 48.9
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 6.3e-60 235.3 250 51.2
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 8.2e-60 235.0 284 48.9
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 1.4e-59 234.2 239 52.3
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 1.8e-59 233.8 284 48.2
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.1e-59 233.0 282 48.9
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 7.0e-59 231.9 283 47.0
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 2.9e-57 226.5 283 47.3
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.1e-56 224.6 283 49.1
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 3.2e-56 223.0 244 50.0
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 8.8e-54 214.9 205 57.6
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 1.1e-51 208.0 250 49.2
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 2.3e-46 190.3 198 53.0
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 3.0e-46 189.9 198 53.5
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 2.0e-45 187.2 225 44.0
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 9.7e-45 184.9 282 42.6
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-44 184.5 233 45.9
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-43 181.4 185 52.4
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 5.3e-43 179.1 192 52.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 3.5e-42 176.4 169 56.8
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 4.7e-39 166.0 195 50.3
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 5.2e-38 162.5 185 49.2
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 5.2e-38 162.5 288 39.6
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 5.7e-37 159.1 247 37.7
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 3.7e-36 156.4 256 43.0
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 5.9e-34 149.1 277 35.0
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 3.8e-33 146.4 160 51.2
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 6.8e-30 135.6 154 46.8
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.8e-30 135.6 255 35.3
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.6e-29 133.7 202 46.0
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.8e-26 122.1 183 42.6
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.3e-25 121.3 167 43.7
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.1e-23 114.0 82 67.1
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.1e-23 114.0 128 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.9e-19 100.9 97 55.7
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.9e-19 100.9 272 32.4
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.3e-17 94.0 198 35.4
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 5.6e-16 89.4 187 34.8
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 4.4e-13 79.7 165 37.0
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 1.1e-11 75.1 88 45.5
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 4.6e-10 69.7 99 43.4
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 3.6e-07 60.1 88 42.0
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 4.7e-07 59.7 37 70.3
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.1e-06 58.5 66 56.1


User provided reference genes

Program Settings