Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 0.0e+00 1105.5 556 100.0
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 2.0e-266 922.2 561 82.5
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 7.2e-261 903.7 555 79.6
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 3.9e-259 897.9 562 78.8
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 5.1e-259 897.5 535 82.4
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 6.3e-257 890.6 566 78.1
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.4e-256 889.4 557 78.1
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 3.5e-255 884.8 571 77.1
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.9e-253 879.0 535 79.6
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 1.4e-251 872.8 560 76.1
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.0e-250 869.0 519 78.4
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 3.1e-248 861.7 556 76.1
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.9e-245 852.4 530 77.0
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.2e-244 849.7 538 76.8
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 2.7e-244 848.6 565 74.7
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.8e-243 845.9 557 75.6
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 8.8e-243 843.6 534 77.0
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 8.8e-243 843.6 557 76.7
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 4.4e-242 841.3 515 77.7
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 4.8e-241 837.8 511 79.5
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 5.4e-240 834.3 556 73.6
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 7.0e-240 833.9 552 74.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.0e-239 832.4 566 74.7
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 3.5e-239 831.6 628 68.8
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 3.5e-239 831.6 628 68.8
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 5.9e-239 830.9 556 75.4
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 5.9e-239 830.9 552 74.3
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 7.7e-239 830.5 547 72.6
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 2.9e-238 828.6 517 77.0
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 6.5e-238 827.4 575 70.6
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 8.5e-238 827.0 531 73.4
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 2.5e-237 825.5 574 72.3
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 4.2e-237 824.7 555 73.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 7.2e-237 823.9 557 73.8
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 1.6e-236 822.8 557 74.7
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 1.6e-236 822.8 560 72.3
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 2.7e-236 822.0 559 74.6
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 2.7e-236 822.0 535 74.8
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 2.7e-236 822.0 532 75.2
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 2.7e-236 822.0 561 71.1
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 8.0e-236 820.5 530 74.0
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 8.0e-236 820.5 533 73.9
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.4e-235 819.7 578 71.6
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 8.8e-235 817.0 559 71.7
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 2.6e-234 815.5 548 72.3
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 6.3e-233 810.8 551 70.4
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 8.3e-233 810.4 558 71.0
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 3.1e-232 808.5 571 71.5
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 5.4e-232 807.7 560 71.6
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 2.0e-231 805.8 562 70.5
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 7.7e-231 803.9 564 72.3
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 2.3e-230 802.4 562 70.6
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 2.5e-229 798.9 571 68.8
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 2.5e-229 798.9 565 69.7
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 5.6e-229 797.7 567 70.4
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 9.5e-229 797.0 561 71.8
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 1.8e-224 782.7 511 73.4
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 1.6e-223 779.6 554 67.9
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.3e-222 775.8 563 68.0
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 9.5e-221 770.4 504 73.8
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.1e-220 769.2 658 60.8
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 3.4e-218 761.9 559 66.4
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 4.4e-218 761.5 433 79.9
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 5.8e-218 761.1 554 65.3
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 1.7e-217 759.6 559 67.4
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.7e-217 759.6 486 75.7
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 2.4e-216 755.7 490 71.2
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 9.2e-216 753.8 581 67.5
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 6.0e-215 751.1 470 74.0
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 3.3e-213 745.3 417 81.8
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 9.5e-213 743.8 559 65.5
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 8.1e-212 740.7 563 65.7
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.3e-211 739.2 559 66.0
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.3e-211 739.2 496 75.0
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 6.8e-211 737.6 474 71.5
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 4.4e-210 734.9 556 66.4
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 3.2e-208 728.8 570 64.9
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 7.1e-208 727.6 571 65.7
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.2e-204 716.8 507 67.7
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 3.1e-203 712.2 562 64.9
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 2.0e-202 709.5 488 67.8
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 2.6e-202 709.1 446 70.6
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 1.1e-200 703.7 488 68.4
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 2.1e-199 699.5 488 68.0
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 6.0e-199 698.0 551 65.3
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 6.0e-199 698.0 551 65.3
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 3.9e-198 695.3 556 64.0
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 2.5e-197 692.6 433 73.4
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 5.6e-197 691.4 433 73.4
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 7.3e-197 691.0 500 68.8
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 2.1e-196 689.5 565 63.2
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 4.6e-191 671.8 513 65.5
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 6.6e-190 667.9 557 59.8
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 4.5e-178 628.6 556 59.7
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 3.5e-175 619.0 445 61.8
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 8.7e-174 614.4 443 64.8
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.4e-170 602.4 373 77.2
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 4.9e-169 598.6 480 56.2
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.8e-166 590.1 440 61.4
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.7e-159 566.2 433 59.8
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 1.4e-152 543.9 527 54.6
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 8.8e-150 534.6 478 58.6
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.4e-109 399.8 267 74.5
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.9e-81 306.6 162 84.6
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 2.9e-60 237.3 460 32.4
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 3.8e-60 236.9 300 45.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 3.0e-57 227.3 138 69.6
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.1e-48 198.7 127 76.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.0e-45 188.0 103 79.6
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 6.5e-44 183.0 263 42.2
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 2.2e-39 167.9 133 62.4
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.8e-39 166.8 94 79.8
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 2.8e-31 141.0 166 47.0
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 5.3e-30 136.7 90 67.8
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 2.6e-29 134.4 129 52.7
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.3e-25 121.3 75 72.0
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.1e-22 110.9 61 82.0
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 3.2e-19 100.9 332 25.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 3.6e-18 97.4 334 25.4
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.8e-17 95.1 194 36.6
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 3.0e-17 94.4 340 25.0
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 5.2e-17 93.6 339 25.4
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 8.8e-17 92.8 338 25.1
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.2e-16 92.4 331 24.5
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.5e-16 92.0 326 25.5
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 2.6e-16 91.3 62 67.7
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 7.5e-16 89.7 332 24.7
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 9.7e-16 89.4 339 25.7
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 9.7e-16 89.4 337 24.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.3e-15 89.0 330 22.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.8e-15 87.8 334 24.3
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 2.8e-15 87.8 336 24.7
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.2e-15 86.3 263 24.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.1e-14 85.9 265 26.8
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.4e-14 85.5 324 23.8
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.8e-14 85.1 326 23.3
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 1.8e-14 85.1 328 24.1
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 5.3e-14 83.6 325 24.3
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 7.0e-14 83.2 339 23.9
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.2e-13 82.4 324 23.5
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.6e-13 82.0 260 24.6
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.6e-13 82.0 325 23.4
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 3.5e-13 80.9 332 22.6
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.0e-12 79.3 223 26.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.7e-12 78.6 255 24.7
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.2e-12 78.2 299 24.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.8e-12 77.4 211 28.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 5.0e-12 77.0 335 22.1
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 6.5e-12 76.6 332 22.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.5e-11 74.7 291 25.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 3.2e-11 74.3 249 24.9
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 7.2e-11 73.2 326 23.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 9.4e-11 72.8 346 23.7
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.2e-10 72.4 327 24.2
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.6e-10 72.0 262 24.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 3.6e-10 70.9 209 27.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 4.7e-10 70.5 395 24.3
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 6.1e-10 70.1 252 23.4
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.0e-09 69.3 327 24.2
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 1.0e-09 69.3 230 25.2
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 1.4e-09 68.9 226 26.1
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 4.0e-09 67.4 48 60.4
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.8e-09 66.6 219 25.6
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.8e-09 66.6 374 22.5
Pp3c10_15710 Physcomitrium patens HOM05D000645 ORTHO05D000494 6.8e-09 66.6 253 22.5
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 1.2e-08 65.9 268 22.4
Hma1.2p1_0003F.1_g003610 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 1.5e-08 65.5 42 69.0
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 3.4e-08 64.3 72 50.0
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 4.8e-07 60.5 214 23.4
ATR0057G085 Amborella trichopoda HOM05D001978 ORTHO05D003036 1.1e-06 59.3 186 25.3
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.4e-06 58.9 90 33.3
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.8e-06 58.5 90 33.3
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 2.4e-06 58.2 90 33.3
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 2.4e-06 58.2 70 40.0
AUR62026981 Chenopodium quinoa HOM05D000096 ORTHO05D000045 3.1e-06 57.8 40 62.5
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 7.0e-06 56.6 195 25.1


User provided reference genes

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