Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 7.5e-33 143.3 73 100.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.7e-27 124.8 73 84.9
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.6e-27 124.4 73 84.9
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.6e-27 124.4 73 84.9
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 8.0e-27 123.2 73 83.6
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 2.3e-26 121.7 73 80.8
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.0e-26 121.3 73 79.5
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.8e-26 119.8 74 82.4
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.2e-25 119.4 75 81.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.6e-25 118.2 73 79.5
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.6e-25 118.2 73 79.5
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.4e-25 117.5 73 76.7
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 9.8e-25 116.3 73 74.0
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.3e-24 115.9 74 78.4
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.3e-24 115.9 73 76.7
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.7e-24 115.5 74 79.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 79.5
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 79.5
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 76.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.2e-24 115.2 75 84.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 75.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.8e-24 114.8 74 79.7
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 3.7e-24 114.4 74 78.4
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-24 114.4 74 78.4
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.7e-24 114.4 74 79.7
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 4.9e-24 114.0 73 75.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 6.3e-24 113.6 73 74.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 77.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 74.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-23 112.1 74 77.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.8e-23 112.1 74 75.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.8e-23 112.1 75 78.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 78.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 75.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 4.1e-23 110.9 74 77.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-22 109.4 74 74.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 71.2
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 3.5e-22 107.8 73 69.9
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 4.5e-22 107.5 71 74.6
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.0e-21 106.3 75 77.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.7e-21 105.5 71 76.1
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.7e-21 105.5 73 69.9
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.9e-21 104.8 73 68.5
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.9e-21 104.8 74 74.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 3.8e-21 104.4 73 72.6
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.0e-21 104.0 73 72.6
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 6.6e-21 103.6 73 69.9
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.1e-20 102.8 73 69.9
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.5e-20 102.4 61 77.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.5e-20 102.4 75 72.0
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.9e-20 102.1 74 71.6
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.9e-20 102.1 61 85.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.9e-20 102.1 76 71.1
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.5e-20 101.7 71 73.2
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.5e-20 101.7 79 70.9
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 5.5e-20 100.5 73 68.5
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-19 99.4 78 66.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.2e-19 99.4 73 67.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-19 99.0 71 67.6
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-19 99.0 78 66.7
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.1e-19 98.6 79 73.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 68.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 66.7
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 66.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 66.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.6e-19 97.8 78 65.4
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.6e-19 97.8 78 65.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 4.7e-19 97.4 75 65.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.7e-19 97.4 75 70.7
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 6.1e-19 97.1 75 65.3
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 6.1e-19 97.1 73 68.5
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 6.1e-19 97.1 73 67.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.1e-19 97.1 75 72.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.0e-18 96.3 76 61.8
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.4e-18 95.9 80 63.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 78 64.1
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-18 95.1 75 62.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.3e-18 95.1 78 66.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.0e-18 94.4 72 69.4
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 5.2e-18 94.0 79 67.1
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 79 65.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 79 64.6
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 79 64.6
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.5e-17 90.1 75 61.3
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 7.5e-17 90.1 75 61.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 7.5e-17 90.1 64 70.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 7.5e-17 90.1 80 58.8
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-16 89.4 68 64.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 3.7e-16 87.8 68 63.2
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 3.7e-16 87.8 68 63.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 3.7e-16 87.8 68 63.2
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.7e-16 87.8 69 68.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.3e-16 87.0 75 58.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 6.3e-16 87.0 64 71.9
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.3e-16 86.7 79 58.2
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 8.3e-16 86.7 68 63.2
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 8.3e-16 86.7 62 64.5
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 8.3e-16 86.7 80 55.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.1e-15 86.3 68 61.8
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.4e-15 85.9 79 60.8
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.8e-15 85.5 67 58.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.8e-15 85.5 80 55.0
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.8e-15 85.5 57 75.4
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.4e-15 85.1 62 62.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.2e-15 84.7 59 66.1
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 4.1e-15 84.3 72 59.7
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.1e-15 84.3 81 55.6
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 4.1e-15 84.3 47 78.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 9.2e-15 83.2 47 76.6
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.7e-14 81.6 73 57.5
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.6e-14 80.9 78 57.7
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 5.9e-14 80.5 76 59.2
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.8e-14 80.1 67 55.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.0e-13 79.7 67 56.7
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.0e-13 79.7 66 60.6
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.0e-13 79.7 55 67.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.0e-13 79.7 69 53.6
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-13 79.0 64 68.8
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.7e-13 79.0 50 70.0
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.3e-13 78.6 54 68.5
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.9e-13 78.2 64 57.8
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 5.0e-13 77.4 75 53.3
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.6e-13 77.0 74 54.1
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 8.6e-13 76.6 50 70.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 8.6e-13 76.6 72 56.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.1e-12 76.3 53 62.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-12 76.3 67 59.7
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.9e-12 75.5 73 50.7
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-12 75.5 45 71.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.5e-12 75.1 72 56.9
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.5e-12 75.1 56 67.9
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.5e-12 75.1 75 48.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 3.3e-12 74.7 62 58.1
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 5.6e-12 73.9 53 64.2
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 9.5e-12 73.2 68 58.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.2e-11 72.8 51 58.8
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.1e-11 72.0 47 63.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-11 71.6 75 53.3
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 52.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 52.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 52.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 52.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.6e-11 71.2 75 52.0
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 8.0e-11 70.1 73 50.7
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 5.2e-10 67.4 72 50.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.8e-09 63.9 35 85.7
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.9e-08 60.8 40 72.5
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.6e-06 54.3 43 60.5


User provided reference genes

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