Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2579 Trochodendron aralioides HOM05D000325 ORTHO05D002025 5.0e-60 234.2 114 100.0
TAR624G1097 Trochodendron aralioides HOM05D000325 ORTHO05D002025 2.6e-32 142.1 117 66.7
TAR383G1009 Trochodendron aralioides HOM05D000325 ORTHO05D002025 4.1e-30 134.8 114 61.4
Dinv41597 Davidia involucrata HOM05D000325 ORTHO05D002025 4.9e-23 111.3 113 55.8
Aqoxy7G01687 Aquilegia oxysepala HOM05D000325 ORTHO05D002025 8.4e-23 110.5 114 53.5
GSVIVG01015396001 Vitis vinifera HOM05D000325 ORTHO05D002025 1.4e-22 109.8 113 54.9
Cpa.g.sc810.4 Carica papaya HOM05D000325 ORTHO05D002025 9.3e-22 107.1 113 54.0
Dinv36623 Davidia involucrata HOM05D000325 ORTHO05D002025 1.7e-20 102.8 114 54.4
Manes.03G020000 Manihot esculenta HOM05D000325 ORTHO05D002025 3.0e-20 102.1 113 51.3
Dinv30504 Davidia involucrata HOM05D000325 ORTHO05D002025 5.1e-20 101.3 109 55.0
vmacro18902 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 1.1e-19 100.1 107 52.3
TWI34G0795 Tripterygium wilfordii HOM05D000325 ORTHO05D002025 2.5e-19 99.0 114 51.8
ClCG06G008500 Citrullus lanatus HOM05D000325 ORTHO05D002025 3.3e-19 98.6 118 51.7
QL02p085481 Quercus lobata HOM05D000325 ORTHO05D002025 3.3e-19 98.6 113 50.4
Actinidia32683 Actinidia chinensis HOM05D000325 ORTHO05D002025 9.6e-19 97.1 112 53.6
Sed0022110 Sechium edule HOM05D000325 ORTHO05D002025 1.6e-18 96.3 114 52.6
Atru.chr7.1345 Acer truncatum HOM05D000325 ORTHO05D002025 2.8e-18 95.5 113 49.6
Cfa003260 Carpinus fangiana HOM05D000325 ORTHO05D002025 2.8e-18 95.5 113 54.0
Prupe.7G230400 Prunus persica HOM05D000325 ORTHO05D002025 3.6e-18 95.1 114 50.9
DCAR_028714 Daucus carota HOM05D000325 ORTHO05D002025 4.8e-18 94.7 112 50.0
MBI15_g08167_MAGBIO Magnolia biondii HOM05D000325 ORTHO05D002025 4.8e-18 94.7 118 53.4
Actinidia20353 Actinidia chinensis HOM05D000325 ORTHO05D002025 8.1e-18 94.0 113 46.9
Hund09199 Selenicereus undatus HOM05D000325 ORTHO05D002025 8.1e-18 94.0 105 50.5
CSS0015846 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 1.1e-17 93.6 108 52.8
Nn2g11758 Nelumbo nucifera HOM05D000325 ORTHO05D002025 1.1e-17 93.6 146 42.5
Actinidia09415 Actinidia chinensis HOM05D000325 ORTHO05D002025 3.1e-17 92.0 112 48.2
Oeu055862.1 Olea europaea HOM05D000325 ORTHO05D002025 3.1e-17 92.0 117 47.9
Ciclev10007676m.g Citrus clementina HOM05D000325 ORTHO05D002025 4.0e-17 91.7 114 50.9
Migut.O00075 Erythranthe guttata HOM05D000325 ORTHO05D002025 4.0e-17 91.7 112 50.9
Cc06_g09620 Coffea canephora HOM05D000325 ORTHO05D002025 6.9e-17 90.9 112 48.2
MD15G1186300 Malus domestica HOM05D000325 ORTHO05D002025 6.9e-17 90.9 114 50.9
MSTRG.6004 Avicennia marina HOM05D000325 ORTHO05D002025 9.0e-17 90.5 113 48.7
MD02G1047800 Malus domestica HOM05D000325 ORTHO05D002025 1.2e-16 90.1 114 51.8
Haze_25711 Corylus avellana HOM05D000325 ORTHO05D002025 1.5e-16 89.7 113 52.2
Oeu002228.1 Olea europaea HOM05D000325 ORTHO05D002025 3.4e-16 88.6 117 46.2
vmacro20695 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 3.4e-16 88.6 115 46.1
Eucgr.C01046 Eucalyptus grandis HOM05D000325 ORTHO05D002025 4.5e-16 88.2 114 51.8
Potri.018G079500 Populus trichocarpa HOM05D000325 ORTHO05D002025 4.5e-16 88.2 116 47.4
Sabra18G0067200 Salix brachista HOM05D000325 ORTHO05D002025 1.3e-15 86.7 116 50.0
Thecc.09G111100 Theobroma cacao HOM05D000325 ORTHO05D002025 1.3e-15 86.7 107 47.7
CiPaw.03G232600 Carya illinoinensis HOM05D000325 ORTHO05D002025 1.7e-15 86.3 113 49.6
Lj9P508T52 Lonicera japonica HOM05D000325 ORTHO05D035065 1.7e-15 86.3 109 47.7
Nitab4.5_0000017g0090 Nicotiana tabacum HOM05D000325 ORTHO05D002025 2.2e-15 85.9 114 48.2
Cc04_g03320 Coffea canephora HOM05D000325 ORTHO05D002025 2.9e-15 85.5 108 48.1
Peaxi162Scf00560g00113 Petunia axillaris HOM05D000325 ORTHO05D002025 2.9e-15 85.5 117 48.7
CSS0013205 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 3.8e-15 85.1 106 49.1
Duzib150G0310 Durio zibethinus HOM05D000325 ORTHO05D002025 3.8e-15 85.1 107 48.6
Nitab4.5_0003316g0010 Nicotiana tabacum HOM05D000325 ORTHO05D002025 6.4e-15 84.3 114 48.2
CsaV3_1G030500 Cucumis sativus L. HOM05D000325 ORTHO05D002025 1.1e-14 83.6 118 51.7
Prupe.3G070200 Prunus persica HOM05D000325 ORTHO05D002025 1.1e-14 83.6 112 47.3
CSS0045642 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 1.4e-14 83.2 113 48.7
MELO3C025335.2 Cucumis melo HOM05D000325 ORTHO05D002025 1.4e-14 83.2 118 49.2
CSS0023025 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 1.9e-14 82.8 113 48.7
Rhsim08G0222100 Rhododendron simsii HOM05D000325 ORTHO05D002025 1.9e-14 82.8 109 45.9
Gohir.D06G060500 Gossypium hirsutum HOM05D000325 ORTHO05D002025 2.4e-14 82.4 107 44.9
MD09G1212300 Malus domestica HOM05D000325 ORTHO05D002025 3.2e-14 82.0 112 47.3
CiPaw.04G164500 Carya illinoinensis HOM05D000325 ORTHO05D002025 4.2e-14 81.6 113 46.0
Hma1.2p1_2039F.1_g312150 Hydrangea macrophylla HOM05D000325 ORTHO05D002025 4.2e-14 81.6 109 45.9
MD17G1194200 Malus domestica HOM05D000325 ORTHO05D002025 7.1e-14 80.9 112 47.3
THA.LOC104799073 Tarenaya hassleriana HOM05D000325 ORTHO05D002025 7.1e-14 80.9 113 45.1
Hund26163 Selenicereus undatus HOM05D000325 ORTHO05D002025 9.3e-14 80.5 105 46.7
ECA232G3144 Erigeron canadensis HOM05D000325 ORTHO05D002025 2.1e-13 79.3 113 47.8
TWI75G1084 Tripterygium wilfordii HOM05D000325 ORTHO05D002025 2.1e-13 79.3 107 42.1
Glyma.07G086600 Glycine max HOM05D000325 ORTHO05D002025 3.5e-13 78.6 113 46.9
Gohir.D07G005600 Gossypium hirsutum HOM05D000325 ORTHO05D002025 4.6e-13 78.2 108 48.1
Gorai.001G005200 Gossypium raimondii HOM05D000325 ORTHO05D002025 4.6e-13 78.2 108 48.1
Thecc.06G089500 Theobroma cacao HOM05D000325 ORTHO05D002025 4.6e-13 78.2 116 45.7
Cfa002076 Carpinus fangiana HOM05D000325 ORTHO05D002025 7.9e-13 77.4 113 44.2
Glyma.09G190400 Glycine max HOM05D000325 ORTHO05D002025 7.9e-13 77.4 113 46.0
RcHm_v2.0_Chr2g0090521 Rosa chinensis HOM05D000325 ORTHO05D002025 7.9e-13 77.4 113 45.1
TWI18G0964 Tripterygium wilfordii HOM05D000325 ORTHO05D002025 7.9e-13 77.4 112 43.8
CAN.G238.1 Capsicum annuum HOM05D000325 ORTHO05D002025 1.0e-12 77.0 114 46.5
Haze_16402 Corylus avellana HOM05D000325 ORTHO05D002025 1.0e-12 77.0 113 43.4
Lalb_Chr09g0331171 Lupinus albus HOM05D000325 ORTHO05D002025 1.3e-12 76.6 114 44.7
PGR142G0567 Punica granatum HOM05D000325 ORTHO05D002025 1.3e-12 76.6 116 45.7
VMungo0464G1992 Vigna mungo HOM05D000325 ORTHO05D002025 1.8e-12 76.3 113 46.9
AUR62011000 Chenopodium quinoa HOM05D000325 ORTHO05D002025 2.3e-12 75.9 107 43.9
Eucgr.F03020 Eucalyptus grandis HOM05D000325 ORTHO05D002025 2.3e-12 75.9 119 45.4
Nitab4.5_0002308g0050 Nicotiana tabacum HOM05D000325 ORTHO05D002025 2.3e-12 75.9 110 46.4
Phvul.004G163100 Phaseolus vulgaris HOM05D000325 ORTHO05D002025 2.3e-12 75.9 113 46.9
Ca_17339_v3 Cicer arietinum L. HOM05D000325 ORTHO05D002025 3.0e-12 75.5 114 44.7
Gohir.A07G006400 Gossypium hirsutum HOM05D000325 ORTHO05D002025 5.1e-12 74.7 107 47.7
Nitab4.5_0000671g0130 Nicotiana tabacum HOM05D000325 ORTHO05D002025 5.1e-12 74.7 110 45.5
arahy.Tifrunner.gnm1.ann1.L3KDU2 Arachis hypogaea HOM05D000325 ORTHO05D002025 6.7e-12 74.3 114 43.0
Lj2g0017706 Lotus japonicus HOM05D000325 ORTHO05D002025 6.7e-12 74.3 113 43.4
Duzib192G0932 Durio zibethinus HOM05D000325 ORTHO05D002025 8.7e-12 73.9 111 46.8
HanXRQChr06g0180021 Helianthus annuus HOM05D000325 ORTHO05D002025 8.7e-12 73.9 113 46.0
arahy.Tifrunner.gnm1.ann1.ZLIL7H Arachis hypogaea HOM05D000325 ORTHO05D002025 1.5e-11 73.2 114 43.0
SalBow2G0660 Salvia bowleyana HOM05D000325 ORTHO05D002025 1.5e-11 73.2 109 44.0
Solyc07g022860.4 Solanum lycopersicum HOM05D000325 ORTHO05D002025 1.5e-11 73.2 113 44.2
Sopen07g016130 Solanum pennellii HOM05D000325 ORTHO05D002025 1.5e-11 73.2 113 44.2
Ca_25527_v3 Cicer arietinum L. HOM05D000325 ORTHO05D002025 2.5e-11 72.4 108 43.5
FvH4_1g04930 Fragaria vesca HOM05D000325 ORTHO05D002025 2.5e-11 72.4 114 44.7
FAN19G1309 Fragaria x ananassa HOM05D000325 ORTHO05D002025 2.5e-11 72.4 114 44.7
FAN23G2984 Fragaria x ananassa HOM05D000325 ORTHO05D002025 2.5e-11 72.4 114 44.7
FAN26G1424 Fragaria x ananassa HOM05D000325 ORTHO05D002025 2.5e-11 72.4 114 44.7
PGR102G1203 Punica granatum HOM05D000325 ORTHO05D002025 2.5e-11 72.4 118 45.8
EL10Ac8g18502 Beta vulgaris HOM05D000325 ORTHO05D002025 4.3e-11 71.6 102 46.1
Oeu033494.1 Olea europaea HOM05D000325 ORTHO05D036976 4.3e-11 71.6 113 41.6
Sed0001455 Sechium edule HOM05D000325 ORTHO05D002025 4.3e-11 71.6 119 46.2
FvH4_6g31290 Fragaria vesca HOM05D000325 ORTHO05D002025 5.6e-11 71.2 113 43.4
FAN14G4325 Fragaria x ananassa HOM05D000325 ORTHO05D002025 5.6e-11 71.2 113 43.4
PSO063G1082 Papaver somniferum HOM05D000325 ORTHO05D002025 5.6e-11 71.2 115 41.7
FAN05G5121 Fragaria x ananassa HOM05D000325 ORTHO05D002025 7.4e-11 70.9 113 43.4
FAN09G2401 Fragaria x ananassa HOM05D000325 ORTHO05D002025 7.4e-11 70.9 113 43.4
Lalb_Chr14g0371481 Lupinus albus HOM05D000325 ORTHO05D002025 7.4e-11 70.9 116 42.2
MSTRG.19591 Avicennia marina HOM05D000325 ORTHO05D002025 9.6e-11 70.5 113 43.4
Medtr6g086635 Medicago truncatula HOM05D000325 ORTHO05D002025 9.6e-11 70.5 113 41.6
SGA_v2.0_scaffold229G43316 Striga asiatica HOM05D000325 ORTHO05D002025 9.6e-11 70.5 117 42.7
vmacro06215 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 9.6e-11 70.5 113 45.1
COL.COLO4_34915 Corchorus olitorius HOM05D000325 ORTHO05D002025 1.3e-10 70.1 101 45.5
FAN28G3027 Fragaria x ananassa HOM05D000325 ORTHO05D002025 1.3e-10 70.1 112 41.1
Medtr8g103540 Medicago truncatula HOM05D000325 ORTHO05D002025 1.3e-10 70.1 114 43.0
PGSC0003DMG402008605 Solanum tuberosum HOM05D000325 ORTHO05D002025 2.1e-10 69.3 113 43.4
DCAR_007562 Daucus carota HOM05D000325 ORTHO05D002025 2.8e-10 68.9 115 40.0
Oeu028159.1 Olea europaea HOM05D000325 ORTHO05D002025 2.8e-10 68.9 108 38.0
TPR.G21689 Trifolium pratense HOM05D000325 ORTHO05D002025 2.8e-10 68.9 114 43.0
Rhsim03G0242800 Rhododendron simsii HOM05D000325 ORTHO05D002025 3.6e-10 68.6 113 41.6
AL7G19490 Arabidopsis lyrata HOM05D000325 ORTHO05D002025 4.8e-10 68.2 107 41.1
Gohir.A06G062200 Gossypium hirsutum HOM05D000325 ORTHO05D002025 4.8e-10 68.2 92 44.6
Nitab4.5_0002859g0030 Nicotiana tabacum HOM05D000325 ORTHO05D002025 4.8e-10 68.2 109 37.6
Potri.001G181300 Populus trichocarpa HOM05D000325 ORTHO05D002025 4.8e-10 68.2 112 42.9
Gorai.010G070400 Gossypium raimondii HOM05D000325 ORTHO05D002025 6.2e-10 67.8 92 43.5
MSTRG.22686 Avicennia marina HOM05D000325 ORTHO05D002025 8.1e-10 67.4 109 38.5
Carub.0007s0822 Capsella rubella HOM05D000325 ORTHO05D002025 8.1e-10 67.4 107 42.1
Duzib235G0290 Durio zibethinus HOM05D000325 ORTHO05D002025 8.1e-10 67.4 115 47.0
Peaxi162Scf00034g00824 Petunia axillaris HOM05D000325 ORTHO05D002025 8.1e-10 67.4 115 42.6
Actinidia32748 Actinidia chinensis HOM05D000325 ORTHO05D002025 1.4e-09 66.6 112 42.9
Lj4g0006060 Lotus japonicus HOM05D000325 ORTHO05D002025 1.4e-09 66.6 114 41.2
Psat1g042440 Pisum sativum HOM05D000325 ORTHO05D002025 1.4e-09 66.6 109 41.3
TPR.G35278 Trifolium pratense HOM05D000325 ORTHO05D002025 1.4e-09 66.6 116 41.4
Psat7g014240 Pisum sativum HOM05D000325 ORTHO05D002025 1.8e-09 66.2 114 42.1
COL.COLO4_30389 Corchorus olitorius HOM05D000325 ORTHO05D002025 4.0e-09 65.1 111 39.6
DCAR_026318 Daucus carota HOM05D000325 ORTHO05D002025 4.0e-09 65.1 105 37.1
Os02g0159200 Oryza sativa ssp. japonica HOM05D000325 ORTHO05D002025 4.0e-09 65.1 111 40.5
AT4G32350 Arabidopsis thaliana HOM05D000325 ORTHO05D002025 5.3e-09 64.7 106 40.6
Duzib187G1612 Durio zibethinus HOM05D000325 ORTHO05D002025 6.9e-09 64.3 99 42.4
CARHR240260 Cardamine hirsuta HOM05D000325 ORTHO05D002025 9.0e-09 63.9 107 38.3
RcHm_v2.0_Chr2g0138021 Rosa chinensis HOM05D000325 ORTHO05D002025 9.0e-09 63.9 114 43.9
unitig_26.g8976 Utricularia gibba HOM05D000325 ORTHO05D007045 9.0e-09 63.9 114 42.1
Peaxi162Scf00015g00049 Petunia axillaris HOM05D000325 ORTHO05D002025 1.2e-08 63.5 113 43.4
Lsat_1_v5_gn_8_95460 Lactuca sativa HOM05D000325 ORTHO05D002025 1.5e-08 63.2 114 42.1
Phvul.002G313400 Phaseolus vulgaris HOM05D000325 ORTHO05D002025 1.5e-08 63.2 114 39.5
Sp7g30120 Schrenkiella parvula HOM05D000325 ORTHO05D002025 2.0e-08 62.8 107 39.3
Ah.09g227950 Amaranthus hybridus HOM05D000325 ORTHO05D002025 2.6e-08 62.4 109 39.4
Hma1.2p1_0659F.1_g197250 Hydrangea macrophylla HOM05D000325 ORTHO05D002025 2.6e-08 62.4 108 42.6
Phvul.005G167600 Phaseolus vulgaris HOM05D000325 ORTHO05D002025 2.6e-08 62.4 114 40.4
Sc18g0001190 Simmondsia chinensis HOM05D000325 ORTHO05D002025 3.4e-08 62.0 106 39.6
Zm00001eb225720 Zea mays HOM05D000325 ORTHO05D002025 3.4e-08 62.0 108 36.1
ATR0980G005 Amborella trichopoda HOM05D000325 ORTHO05D002025 4.5e-08 61.6 113 39.8
QL05p023337 Quercus lobata HOM05D000325 ORTHO05D002025 4.5e-08 61.6 108 41.7
Potri.003G054700 Populus trichocarpa HOM05D000325 ORTHO05D002025 5.8e-08 61.2 112 41.1
Sabra03G0030900 Salix brachista HOM05D000325 ORTHO05D002025 7.6e-08 60.8 113 40.7
CAN.G438.73 Capsicum annuum HOM05D000325 ORTHO05D002025 9.9e-08 60.5 110 42.7
THA.LOC104811108 Tarenaya hassleriana HOM05D000325 ORTHO05D002025 9.9e-08 60.5 74 48.6
Os06g0687000 Oryza sativa ssp. japonica HOM05D000325 ORTHO05D002025 1.3e-07 60.1 108 38.0
PGSC0003DMG400005688 Solanum tuberosum HOM05D000325 ORTHO05D002025 1.3e-07 60.1 108 42.6
Solyc03g120120.3 Solanum lycopersicum HOM05D000325 ORTHO05D002025 1.7e-07 59.7 113 42.5
Sopen03g038990 Solanum pennellii HOM05D000325 ORTHO05D002025 1.7e-07 59.7 108 41.7
Ciclev10025304m.g Citrus clementina HOM05D000325 ORTHO05D002025 2.2e-07 59.3 132 33.3
VMungo1080G0075 Vigna mungo HOM05D000325 ORTHO05D002025 2.2e-07 59.3 112 40.2
arahy.Tifrunner.gnm1.ann1.8ZRR6W Arachis hypogaea HOM05D000325 ORTHO05D002025 3.8e-07 58.5 115 40.0
arahy.Tifrunner.gnm1.ann1.YIBE0H Arachis hypogaea HOM05D000325 ORTHO05D002025 3.8e-07 58.5 115 40.0
VMungo0251G0249 Vigna mungo HOM05D000325 ORTHO05D002025 6.4e-07 57.8 114 37.7
HanXRQChr09g0275221 Helianthus annuus HOM05D000325 ORTHO05D002025 1.4e-06 56.6 110 36.4
Potri.003G054500 Populus trichocarpa HOM05D000325 ORTHO05D002025 1.9e-06 56.2 112 40.2
Potri.003G054601 Populus trichocarpa HOM05D000325 ORTHO05D002025 1.9e-06 56.2 112 40.2
Gohir.A05G130500 Gossypium hirsutum HOM05D000325 ORTHO05D002025 3.2e-06 55.5 112 40.2
ECA232G4097 Erigeron canadensis HOM05D000325 ORTHO05D002025 4.2e-06 55.1 59 49.2
Gohir.D05G129900 Gossypium hirsutum HOM05D000325 ORTHO05D002025 4.2e-06 55.1 112 40.2
Gorai.009G133700 Gossypium raimondii HOM05D000325 ORTHO05D002025 4.2e-06 55.1 112 40.2


User provided reference genes

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