Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 3.3e-248 861.3 444 100.0
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 6.6e-140 501.5 446 63.9
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 4.7e-138 495.4 444 64.9
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 3.5e-133 479.2 452 60.4
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 5.4e-118 428.7 445 57.8
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 1.0e-116 424.5 445 57.8
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 3.9e-116 422.5 449 56.6
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 1.6e-109 400.6 445 53.9
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 1.1e-107 394.4 442 53.6
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 1.9e-107 393.7 420 55.7
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 1.9e-107 393.7 429 55.2
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 7.3e-107 391.7 446 54.3
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 2.4e-105 386.7 452 52.2
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 9.0e-105 384.8 447 53.7
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 1.9e-102 377.1 443 52.8
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 7.1e-102 375.2 447 51.2
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 2.1e-98 363.6 447 52.6
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 2.1e-98 363.6 447 51.7
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 4.8e-98 362.5 445 50.6
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 6.2e-98 362.1 444 50.2
TAR365G0645 Trochodendron aralioides HOM05D007369 ORTHO05D009369 8.1e-98 361.7 260 77.7
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 3.1e-97 359.8 431 51.7
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 9.9e-96 354.8 434 51.6
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 6.0e-93 345.5 357 59.7
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 6.2e-90 335.5 437 50.1
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 8.4e-87 325.1 446 49.1
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 2.3e-84 317.0 428 49.8
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 5.1e-84 315.8 511 43.4
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 1.9e-83 313.9 482 44.8
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 1.6e-82 310.8 355 55.5
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 5.3e-81 305.8 445 46.5
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 2.6e-80 303.5 447 47.2
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 7.6e-80 302.0 451 45.2
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 1.3e-79 301.2 447 45.6
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 1.6e-77 294.3 428 48.6
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 2.1e-77 293.9 448 45.1
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 1.0e-76 291.6 445 44.0
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 2.2e-74 283.9 445 42.9
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 1.8e-73 280.8 449 43.9
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.8e-73 280.8 449 43.9
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.6e-72 276.9 449 43.7
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 1.0e-71 275.0 448 41.7
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.5e-71 272.3 449 42.3
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 8.5e-71 271.9 438 42.5
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.0e-68 265.0 447 41.2
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 6.7e-68 262.3 447 42.5
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 3.7e-66 256.5 429 43.1
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 3.7e-66 256.5 428 42.8
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 6.9e-65 252.3 416 42.8
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 1.2e-64 251.5 476 38.4
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 2.5e-62 243.8 442 40.3
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 9.4e-62 241.9 470 38.9
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 2.1e-61 240.7 401 43.4
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 6.1e-61 239.2 443 40.2
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 2.0e-59 234.2 504 37.1
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 1.3e-58 231.5 497 37.0
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 1.7e-58 231.1 447 37.6
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 4.8e-58 229.6 318 47.5
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 1.1e-57 228.4 341 44.6
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 1.5e-56 224.6 353 43.3
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 5.9e-56 222.6 442 38.5
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 7.7e-56 222.2 227 59.5
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 5.0e-55 219.5 350 43.4
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.1e-54 218.4 449 38.3
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 3.6e-53 213.4 383 41.8
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 3.3e-51 206.8 400 40.2
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 7.4e-51 205.7 234 53.0
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 4.5e-48 196.4 420 37.6
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 5.5e-46 189.5 430 37.2
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 7.2e-46 189.1 171 61.4
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 1.6e-45 188.0 383 38.6
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 2.7e-45 187.2 357 39.5
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 2.7e-45 187.2 387 38.8
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 8.0e-45 185.7 371 40.4
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 7.5e-43 179.1 448 34.4
MD16G1175500 Malus domestica HOM05D007369 ORTHO05D009369 4.5e-40 169.9 266 44.0
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 1.7e-39 167.9 162 53.7
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 9.4e-38 162.2 151 60.9
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 2.7e-37 160.6 186 50.5
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 2.2e-34 151.0 404 35.6
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.4e-33 147.5 128 60.2
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 7.0e-33 146.0 407 33.4
AagrBONN_evm.TU.Sc2ySwM_362.2687 Anthoceros agrestis HOM05D007369 ORTHO05D009369 5.9e-32 142.9 383 32.4
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 5.9e-32 142.9 313 36.1
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 2.3e-31 141.0 341 32.8
SEGI_26846 Sequoiadendron giganteum HOM05D007369 ORTHO05D009369 6.8e-28 129.4 171 40.4
MD16G1175700 Malus domestica HOM05D007369 ORTHO05D009369 2.0e-27 127.9 91 70.3
Hund24911 Selenicereus undatus HOM05D007369 ORTHO05D009369 1.1e-25 122.1 462 29.2
Zm00001eb410560 Zea mays HOM05D007369 ORTHO05D009369 5.6e-22 109.8 391 28.1
MD16G1175600 Malus domestica HOM05D007369 ORTHO05D009369 1.1e-14 85.5 83 59.0
Mapoly0008s0171 Marchantia polymorpha HOM05D007369 ORTHO05D009369 2.3e-12 77.8 164 37.2
Lsat_1_v5_gn_5_50560 Lactuca sativa HOM05D007369 ORTHO05D009369 5.2e-12 76.6 403 27.0
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 2.9e-10 70.9 230 29.1
SMO351G0254 Selaginella moellendorffii HOM05D002232 ORTHO05D002530 8.6e-07 59.3 275 27.6
CDE02G2863 Ceratophyllum demersum HOM05D007369 ORTHO05D009369 1.1e-06 58.9 84 42.9
CBR_g38889 Chara braunii HOM05D007369 ORTHO05D009369 9.5e-06 55.8 70 41.4


User provided reference genes

Program Settings