Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.7e-49 197.2 95 100.0
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.6e-27 125.9 67 86.6
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.8e-23 112.5 64 78.1
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 9.1e-23 110.2 95 60.0
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 2.2e-21 105.5 69 73.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.2e-20 101.7 59 78.0
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.0e-18 94.7 66 68.2
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.5e-17 92.8 59 74.6
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.5e-17 92.8 59 74.6
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 2.0e-17 92.4 59 72.9
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.6e-17 92.0 59 71.2
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.6e-17 92.0 59 72.9
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.4e-17 91.7 59 71.2
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 3.7e-16 88.2 59 67.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.8e-16 87.8 59 67.8
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.3e-16 87.4 59 69.5
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.3e-16 87.4 59 67.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.1e-15 86.7 73 65.8
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 1.8e-15 85.9 59 67.8
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.4e-15 85.5 59 69.5
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 3.1e-15 85.1 54 72.2
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.4e-15 84.3 64 67.2
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 2.0e-14 82.4 54 70.4
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 3.5e-14 81.6 49 67.3
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 4.5e-14 81.3 54 68.5
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.5e-14 81.3 54 68.5
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.5e-14 81.3 54 68.5
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.5e-14 81.3 54 68.5
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 1.3e-13 79.7 56 67.9
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-13 79.3 54 66.7
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-13 79.3 59 62.7
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.7e-13 79.3 61 60.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 5.0e-13 77.8 59 64.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 7.2e-12 73.9 62 64.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 7.2e-12 73.9 62 64.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.8e-11 72.0 64 62.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 2.8e-11 72.0 65 60.0
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.6e-11 71.6 59 59.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.4e-10 69.7 51 68.6
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.8e-10 69.3 56 66.1
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.3e-10 68.9 51 66.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.0e-10 68.6 63 63.5
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.0e-10 68.2 55 65.5
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.2e-10 67.8 42 69.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 6.8e-10 67.4 51 64.7
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 6.8e-10 67.4 56 60.7
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 8.8e-10 67.0 50 62.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.8e-10 67.0 51 64.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.8e-10 67.0 51 64.7
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 8.8e-10 67.0 47 63.8
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 8.8e-10 67.0 63 61.9
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 8.8e-10 67.0 51 64.7
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 8.8e-10 67.0 51 64.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 8.8e-10 67.0 51 64.7
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 8.8e-10 67.0 51 64.7
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.2e-09 66.6 52 63.5
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.5e-09 66.2 51 66.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.6e-09 65.5 59 55.9
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.6e-09 65.5 51 62.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.6e-09 65.5 51 64.7
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 2.6e-09 65.5 58 62.1
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.6e-09 65.5 63 61.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.4e-09 65.1 51 62.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 3.4e-09 65.1 51 64.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.4e-09 65.1 59 61.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 3.4e-09 65.1 52 61.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.4e-09 65.1 51 64.7
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.4e-09 65.1 31 80.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 4.4e-09 64.7 59 61.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.4e-09 64.7 52 61.5
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.4e-09 64.7 51 64.7
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.4e-09 64.7 51 62.7
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 7.5e-09 63.9 52 61.5
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 7.5e-09 63.9 59 61.0
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 7.5e-09 63.9 51 62.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.5e-09 63.9 51 62.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 7.5e-09 63.9 60 56.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 7.5e-09 63.9 51 62.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 7.5e-09 63.9 51 62.7
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 62.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 9.8e-09 63.5 51 60.8
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 9.8e-09 63.5 59 61.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.3e-08 63.2 51 60.8
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.3e-08 63.2 60 61.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.3e-08 63.2 51 62.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.3e-08 63.2 51 60.8
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.7e-08 62.8 51 60.8
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-08 62.8 62 61.3
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-08 62.8 62 56.5
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.7e-08 62.8 59 59.3
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-08 62.4 53 60.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.2e-08 62.4 53 60.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.2e-08 62.4 51 60.8
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-08 62.4 43 62.8
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.2e-08 62.4 51 62.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 2.2e-08 62.4 66 59.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.8e-08 62.0 43 65.1
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.8e-08 62.0 51 62.7
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 3.7e-08 61.6 51 58.8
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 6.3e-08 60.8 70 52.9
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 6.3e-08 60.8 64 57.8
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.3e-08 60.8 43 60.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.1e-07 60.1 51 60.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.1e-07 60.1 48 66.7
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 1.4e-07 59.7 56 55.4
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.4e-07 59.7 51 58.8
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.8e-07 59.3 50 60.0
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.8e-07 59.3 51 56.9
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.8e-07 59.3 60 56.7
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-07 59.3 57 54.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.4e-07 58.9 60 51.7
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.4e-07 58.9 60 51.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.4e-07 58.9 51 60.8
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.4e-07 58.9 54 57.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-07 58.9 54 57.4
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-07 58.9 54 57.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-07 58.9 54 57.4
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.1e-07 58.5 51 54.9
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 3.1e-07 58.5 50 60.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.1e-07 58.5 53 56.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 4.1e-07 58.2 54 55.6
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.1e-07 58.2 54 55.6
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 5.4e-07 57.8 53 56.6
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.4e-07 57.8 54 53.7
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 5.4e-07 57.8 51 54.9
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 9.2e-07 57.0 50 60.0
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 9.2e-07 57.0 50 60.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 9.2e-07 57.0 60 50.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 9.2e-07 57.0 57 56.1
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.2e-07 57.0 51 58.8
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.2e-06 56.6 52 57.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.2e-06 56.6 61 49.2
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.0e-06 55.8 42 59.5
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.0e-06 55.8 59 50.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.7e-06 55.5 48 62.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.7e-06 55.5 43 58.1
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.5e-06 55.1 61 50.8
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.5e-06 55.1 60 56.7
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 5.9e-06 54.3 57 50.9
Actinidia13869 Actinidia chinensis HOM05D000283 ORTHO05D000358 7.8e-06 53.9 29 72.4
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 7.8e-06 53.9 50 52.0
vmacro23491 Vaccinium macrocarpon HOM05D004463 ORTHO05D004724 7.8e-06 53.9 25 80.0


User provided reference genes

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