Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 9.8e-107 390.2 204 100.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.0e-91 339.3 204 87.3
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 3.2e-81 305.4 204 77.0
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.3e-78 295.0 202 78.7
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.1e-77 292.7 202 76.2
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 6.2e-77 291.2 206 74.3
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 3.1e-76 288.9 213 73.7
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.8e-75 284.6 202 75.7
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 7.6e-75 284.3 204 74.0
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 9.9e-75 283.9 207 75.4
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 9.9e-75 283.9 212 73.6
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 9.9e-75 283.9 205 73.7
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 3.8e-74 282.0 205 73.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 6.4e-74 281.2 221 69.2
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 8.4e-74 280.8 205 72.7
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 8.4e-74 280.8 229 68.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 3.2e-73 278.9 204 73.5
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.2e-73 278.5 209 72.7
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 2.7e-72 275.8 206 71.4
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.3e-71 273.5 212 73.1
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.9e-70 269.6 204 72.5
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.9e-70 269.6 204 72.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.9e-70 269.6 212 72.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 8.1e-69 264.2 205 71.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.1e-68 263.8 224 67.0
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.1e-68 263.8 219 67.6
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.8e-68 263.1 225 65.8
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.4e-68 262.7 207 69.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 5.8e-67 258.1 202 70.8
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.3e-66 256.9 212 66.0
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.3e-66 256.9 204 69.1
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 3.8e-66 255.4 219 64.4
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 6.4e-66 254.6 225 64.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.4e-65 253.4 208 68.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.9e-65 253.1 218 64.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 3.2e-65 252.3 246 60.6
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.4e-65 251.5 217 65.4
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 3.5e-64 248.8 209 67.9
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.0e-63 247.3 217 65.0
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.0e-63 245.7 224 65.2
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 8.7e-63 244.2 211 62.6
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.9e-62 243.0 253 58.9
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 7.4e-62 241.1 270 55.9
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 4.8e-61 238.4 221 62.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.1e-61 237.7 236 58.9
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.1e-60 237.3 213 64.3
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.4e-60 236.9 229 60.7
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 2.4e-60 236.1 214 65.0
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.3e-60 235.0 204 62.3
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 6.9e-60 234.6 219 63.5
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.2e-59 233.8 204 62.7
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.6e-59 232.6 205 63.9
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 2.6e-59 232.6 217 61.3
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 7.6e-59 231.1 210 61.9
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.3e-58 230.3 260 56.2
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.3e-58 230.3 206 65.5
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 2.9e-58 229.2 164 76.8
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 3.8e-58 228.8 222 62.2
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.1e-57 227.3 202 62.9
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 6.0e-56 221.5 172 73.8
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 6.7e-55 218.0 214 60.3
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.5e-54 216.9 164 72.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 4.3e-54 215.3 207 59.4
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 2.8e-53 212.6 217 58.1
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 9.0e-52 207.6 207 57.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.0e-50 204.1 205 59.5
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.7e-50 203.4 166 68.7
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 6.5e-50 201.4 215 55.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 9.3e-49 197.6 176 66.5
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 4.6e-48 195.3 173 65.9
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 7.9e-48 194.5 162 67.9
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 7.9e-48 194.5 208 54.8
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.3e-47 193.7 272 47.8
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.9e-47 192.2 162 66.0
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.1e-46 190.7 179 60.9
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.5e-46 190.3 266 48.1
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 8.2e-45 184.5 185 60.5
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.1e-44 184.1 163 66.9
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 7.6e-43 177.9 206 54.4
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 7.6e-43 177.9 204 50.5
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 5.0e-42 175.3 94 90.4
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.1e-41 174.1 94 91.5
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.4e-41 173.7 94 90.4
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.9e-41 173.3 94 90.4
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.2e-41 172.6 94 89.4
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.2e-41 172.6 119 75.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 5.5e-41 171.8 97 86.6
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 9.3e-41 171.0 94 90.4
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.1e-40 169.9 218 50.5
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 2.1e-40 169.9 94 90.4
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.0e-39 166.0 94 87.2
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 6.7e-39 164.9 224 49.6
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 8.7e-39 164.5 95 86.3
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 3.3e-38 162.5 173 56.6
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.2e-37 159.8 94 87.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 2.2e-37 159.8 94 87.2
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 3.4e-35 152.5 287 40.8
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 4.5e-35 152.1 313 39.3
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 7.7e-35 151.4 97 85.6
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.2e-34 149.8 204 46.6
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 8.5e-34 147.9 238 45.0
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.9e-33 146.7 172 50.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 4.2e-33 145.6 186 51.1
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 3.9e-31 139.0 157 56.7
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.6e-30 136.3 208 44.7
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.0e-27 126.7 102 70.6
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 4.5e-27 125.6 144 57.6
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.3e-26 124.0 166 45.2
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.7e-26 123.6 107 67.3
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.7e-24 116.3 159 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 2.6e-22 109.8 207 40.6
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 3.3e-22 109.4 63 81.0
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.3e-21 107.5 114 55.3
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 4.8e-21 105.5 280 35.7
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 9.1e-20 101.3 121 52.9
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.0e-19 100.1 178 40.4
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 5.9e-19 98.6 134 47.8
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.3e-18 97.4 57 89.5
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 4.7e-16 89.0 162 42.0
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 4.7e-16 89.0 162 42.0
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.0e-15 86.3 169 36.7
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 2.6e-14 83.2 111 50.5
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 9.7e-14 81.3 40 90.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 8.2e-13 78.2 54 70.4
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 1.8e-12 77.0 110 49.1
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.2e-11 74.3 123 41.5
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.6e-11 73.9 84 52.4
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.2e-10 70.1 41 82.9
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.1e-09 67.8 87 47.1
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 1.6e-08 63.9 85 51.8
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.6e-08 63.9 44 77.3
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.0e-07 61.2 40 75.0
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 1.4e-07 60.8 83 39.8
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.3e-07 60.1 35 85.7


User provided reference genes

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