Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.3e-140 500.4 251 100.0
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.9e-113 411.8 247 82.6
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.2e-110 401.4 249 80.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 8.4e-100 367.5 246 72.0
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.7e-97 359.8 253 70.0
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 1.3e-95 353.6 252 69.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.3e-95 353.6 254 70.5
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 1.6e-95 353.2 247 70.4
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.8e-95 351.7 223 75.8
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.1e-95 350.9 223 75.3
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.1e-94 350.5 254 68.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.1e-94 349.0 223 74.9
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 3.1e-94 349.0 253 68.0
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 5.3e-94 348.2 247 69.6
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 9.0e-94 347.4 252 69.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 1.2e-93 347.1 221 75.6
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.2e-93 347.1 221 76.0
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 4.4e-93 345.1 251 68.5
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.7e-92 343.2 249 67.9
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.2e-92 342.8 253 69.6
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 2.9e-92 342.4 253 66.8
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.9e-92 341.7 213 75.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.1e-91 340.5 247 68.4
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.9e-91 339.7 248 68.1
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.4e-91 338.2 220 74.5
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.2e-90 337.0 248 66.5
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-90 336.7 221 73.8
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.5e-90 335.5 221 73.8
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.5e-90 335.5 251 66.9
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 6.0e-90 334.7 249 67.5
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.0e-89 334.0 248 64.9
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 3.0e-89 332.4 249 67.5
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 3.9e-89 332.0 247 66.8
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 6.6e-89 331.3 249 65.9
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 6.6e-89 331.3 215 75.8
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 8.7e-89 330.9 250 65.2
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.5e-88 329.3 250 66.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.1e-87 326.2 295 59.7
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 3.6e-87 325.5 269 62.5
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.8e-87 325.1 228 70.2
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 6.2e-87 324.7 234 68.8
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.1e-86 323.9 271 60.9
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.4e-86 323.6 249 65.9
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.8e-86 323.2 224 72.3
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.9e-86 321.2 227 71.4
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.2e-85 320.5 247 64.0
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.2e-85 320.5 227 70.9
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.6e-85 319.3 251 63.7
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.4e-85 318.9 227 70.5
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 3.4e-85 318.9 252 63.1
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.5e-85 318.5 227 70.9
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 5.8e-85 318.2 224 71.0
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 2.2e-84 316.2 220 70.9
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 2.2e-84 316.2 262 61.1
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 4.9e-84 315.1 230 66.5
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 6.4e-84 314.7 279 57.7
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 2.4e-83 312.8 245 62.0
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 3.2e-83 312.4 220 70.9
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 4.2e-83 312.0 245 62.0
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 5.4e-83 311.6 200 75.0
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.1e-82 309.7 219 70.8
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.0e-81 307.4 257 60.3
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 1.0e-81 307.4 272 59.6
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 1.3e-81 307.0 201 73.1
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 8.7e-81 304.3 271 59.4
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.5e-80 303.5 255 60.4
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 2.5e-80 302.8 223 66.4
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 3.3e-80 302.4 276 60.1
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 7.4e-80 301.2 280 60.0
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 9.6e-80 300.8 259 60.6
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.2e-79 298.1 253 59.3
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.8e-78 296.6 254 59.8
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.4e-78 296.2 222 64.9
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 3.1e-78 295.8 230 65.2
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 5.3e-78 295.0 313 53.4
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.5e-77 293.5 222 64.4
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.5e-77 293.5 328 49.4
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.0e-76 290.8 237 62.0
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 3.8e-76 288.9 250 56.8
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 4.9e-76 288.5 196 69.4
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 1.4e-75 287.0 238 61.8
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 3.2e-75 285.8 255 58.8
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 5.5e-75 285.0 236 61.0
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 7.1e-75 284.6 238 60.1
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 7.1e-75 284.6 238 60.1
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 9.3e-75 284.3 247 59.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 1.2e-74 283.9 236 60.6
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 3.5e-74 282.3 219 63.5
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 7.9e-74 281.2 226 62.4
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.0e-73 279.3 247 56.7
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 3.0e-73 279.3 220 62.3
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 6.7e-73 278.1 238 58.8
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 8.7e-73 277.7 239 59.8
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 3.3e-72 275.8 220 61.4
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 5.7e-72 275.0 231 58.4
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.3e-71 273.9 196 66.8
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.8e-71 272.7 247 55.9
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 6.2e-71 271.6 195 66.7
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 8.2e-71 271.2 196 65.8
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.1e-70 270.8 220 61.4
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-70 270.4 227 60.8
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 3.1e-70 269.2 177 74.0
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.2e-69 267.3 223 58.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.5e-69 266.9 220 59.1
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 3.2e-67 259.2 249 54.2
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 4.2e-67 258.8 249 52.6
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.2e-66 257.3 276 49.6
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-66 257.3 247 55.1
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.1e-64 250.8 249 53.4
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 1.1e-59 234.2 194 59.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.9e-59 233.4 255 51.4
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.0e-41 174.5 147 59.9
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 6.3e-39 165.2 191 42.9
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 2.3e-33 146.7 223 35.0
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.1e-27 127.9 116 58.6
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.5e-27 127.5 151 38.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.2e-24 117.9 197 38.1
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 1.2e-18 97.8 88 54.5


User provided reference genes

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