Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.2e-80 303.5 200 100.0
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 7.7e-56 221.1 200 74.5
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 6.1e-53 211.5 202 78.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 4.8e-50 201.8 211 71.6
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 6.3e-50 201.4 200 76.0
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 4.1e-49 198.7 116 87.1
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 5.4e-49 198.4 200 74.0
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.2e-48 197.2 203 69.5
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.5e-48 195.3 200 70.5
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 5.9e-48 194.9 200 74.5
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.0e-47 194.1 111 88.3
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 2.3e-47 193.0 116 84.5
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 2.9e-47 192.6 225 69.8
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 3.8e-47 192.2 113 87.6
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 8.6e-47 191.0 200 73.0
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 8.6e-47 191.0 114 85.1
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 8.6e-47 191.0 113 86.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 8.6e-47 191.0 113 86.7
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.5e-46 190.3 200 73.5
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.9e-46 189.9 200 69.5
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.3e-46 189.1 200 63.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 4.2e-46 188.7 111 87.4
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.2e-46 188.0 200 74.0
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 7.2e-46 188.0 115 81.7
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 7.2e-46 188.0 115 81.7
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 7.2e-46 188.0 200 70.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 9.5e-46 187.6 201 69.7
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 9.5e-46 187.6 200 68.5
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.2e-45 187.2 111 86.5
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.2e-45 187.2 114 85.1
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.6e-45 186.8 112 84.8
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.1e-45 186.4 206 68.4
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.8e-45 186.0 110 87.3
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 3.6e-45 185.7 200 73.5
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 8.0e-45 184.5 200 66.5
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 8.0e-45 184.5 116 79.3
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.0e-44 184.1 199 69.8
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.4e-44 183.7 109 87.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.4e-44 183.7 200 69.5
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 1.8e-44 183.3 200 71.5
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.0e-44 182.6 202 68.8
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.0e-44 182.6 107 87.9
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.0e-44 182.2 201 72.6
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 5.2e-44 181.8 115 79.1
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 6.8e-44 181.4 111 82.9
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 8.9e-44 181.0 200 70.0
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 8.9e-44 181.0 113 82.3
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 8.9e-44 181.0 113 82.3
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 8.9e-44 181.0 107 86.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 1.2e-43 180.6 116 79.3
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.5e-43 180.3 121 79.3
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 2.0e-43 179.9 104 86.5
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 2.0e-43 179.9 108 83.3
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.6e-43 179.5 201 71.6
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.6e-43 179.5 107 85.0
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.4e-43 179.1 111 81.1
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 5.7e-43 178.3 115 81.7
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 7.5e-43 177.9 103 88.3
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 9.8e-43 177.6 108 81.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 9.8e-43 177.6 104 85.6
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 84.0
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.7e-42 176.8 203 71.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.2e-42 176.4 115 78.3
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.2e-42 176.4 105 83.8
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.2e-42 176.4 105 83.8
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.9e-42 175.3 200 69.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 4.9e-42 175.3 200 69.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 6.3e-42 174.9 200 69.0
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 6.3e-42 174.9 200 68.5
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.3e-42 174.5 200 71.5
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.4e-41 173.7 117 76.9
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 2.4e-41 172.9 206 68.4
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.4e-41 172.9 201 70.6
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.1e-41 172.6 110 80.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 3.1e-41 172.6 200 71.5
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.1e-41 172.6 106 82.1
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-41 172.2 200 66.0
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 4.1e-41 172.2 105 81.9
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 5.4e-41 171.8 204 64.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.0e-41 171.4 111 77.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-40 169.5 200 63.5
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 3.5e-40 169.1 202 69.8
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 4.5e-40 168.7 204 61.8
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.5e-40 168.7 103 80.6
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.5e-40 168.7 202 68.8
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.5e-40 168.7 200 65.0
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.9e-40 168.3 103 81.6
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.9e-40 168.3 103 81.6
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 5.9e-40 168.3 101 84.2
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 7.8e-40 167.9 103 82.5
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.0e-39 167.5 106 78.3
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.0e-39 167.5 200 68.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 1.0e-39 167.5 272 44.1
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 2.3e-39 166.4 104 80.8
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.8e-39 165.6 200 66.5
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 5.0e-39 165.2 200 66.5
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 8.6e-39 164.5 111 75.7
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.6e-39 164.5 105 78.1
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.6e-39 164.5 200 66.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.1e-38 164.1 101 82.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.1e-38 164.1 101 82.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.5e-38 163.7 201 64.2
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.5e-38 163.7 205 63.9
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.9e-38 163.3 101 82.2
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-38 163.3 108 76.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.9e-38 163.3 108 76.9
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.9e-38 163.3 116 73.3
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.5e-38 162.9 202 65.8
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 7.3e-38 161.4 115 73.9
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.2e-37 160.6 115 73.9
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 2.8e-37 159.5 106 76.4
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 2.8e-37 159.5 106 76.4
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 6.1e-37 158.3 105 79.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 1.4e-36 157.1 141 65.2
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 3.0e-36 156.0 205 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.5e-35 153.7 118 67.8
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 2.6e-35 152.9 112 71.4
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 3.2e-33 146.0 188 48.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 9.2e-33 144.4 116 66.4
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.2e-32 144.1 118 66.9
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 4.6e-32 142.1 171 69.0
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.0e-31 141.0 165 51.5
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.3e-31 139.8 124 65.3
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.9e-30 136.7 80 87.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.6e-29 133.7 84 79.8
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 2.8e-29 132.9 80 82.5
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.1e-28 131.0 191 44.5
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.5e-27 127.1 71 87.3
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 9.8e-27 124.4 87 72.4
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.1e-25 120.9 87 71.3
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.4e-25 119.8 87 70.1
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 9.2e-25 117.9 225 37.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.2e-24 117.5 162 64.8
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 3.0e-23 112.8 65 84.6
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 3.0e-23 112.8 65 84.6
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 1.4e-20 104.0 229 53.7
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.0e-19 100.1 72 68.1
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-17 94.4 170 49.4
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-17 93.6 155 44.5
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.9e-17 93.6 180 55.0
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 4.1e-17 92.4 114 48.2
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 9.2e-17 91.3 111 55.0
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 5.1e-15 85.5 254 40.9
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 8.6e-15 84.7 186 34.9
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 8.6e-15 84.7 186 34.9
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-14 84.3 116 47.4
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.5e-14 84.0 53 83.0
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 6.2e-13 78.6 82 52.4
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.5e-11 73.9 140 67.9
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 7.6e-11 71.6 98 49.0
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 7.6e-11 71.6 137 65.0
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.9e-10 69.7 51 74.5
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 1.9e-09 67.0 34 82.4
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 7.1e-09 65.1 137 60.6
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.7e-08 63.2 133 62.4
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 6.0e-08 62.0 138 56.5
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-07 60.5 138 55.1
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 5.6e-06 55.5 39 74.4
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 7.3e-06 55.1 139 57.6


User provided reference genes

Program Settings