Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.4e-60 236.1 122 100.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.1e-55 218.4 121 89.3
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.8e-54 214.2 118 90.7
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 7.5e-54 213.8 118 89.0
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 9.8e-54 213.4 121 86.8
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.3e-53 213.0 118 89.8
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.9e-53 211.8 118 90.7
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.9e-53 211.8 118 87.3
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.9e-53 211.8 121 84.3
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 4.9e-53 211.1 118 88.1
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.9e-53 211.1 118 86.4
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.9e-53 211.1 118 88.1
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 6.4e-53 210.7 118 87.3
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 8.3e-53 210.3 118 86.4
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.3e-53 210.3 123 86.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 8.3e-53 210.3 118 89.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.1e-52 209.9 119 86.6
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-52 209.9 117 88.9
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.4e-52 209.5 120 87.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.9e-52 209.1 118 86.4
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.9e-52 209.1 118 86.4
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.4e-52 208.8 118 84.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.2e-52 208.4 117 87.2
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.2e-52 208.4 117 85.5
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 3.2e-52 208.4 117 85.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.2e-52 208.4 118 84.7
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.1e-52 208.0 118 87.3
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 5.4e-52 207.6 118 86.4
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.4e-52 207.6 124 83.9
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 9.2e-52 206.8 118 85.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 9.2e-52 206.8 121 83.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.6e-51 206.1 117 86.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.0e-51 205.7 118 85.6
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-51 205.7 118 85.6
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.7e-51 205.3 118 86.4
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.7e-51 205.3 118 85.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 4.6e-51 204.5 118 84.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.6e-51 204.5 118 85.6
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 7.8e-51 203.8 119 84.0
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.0e-50 203.4 117 87.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.3e-50 203.0 118 84.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.3e-50 203.0 118 84.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.3e-50 203.0 118 81.4
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.7e-50 202.6 118 84.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.3e-50 202.2 118 85.6
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.0e-50 201.8 118 83.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.9e-50 201.4 118 83.1
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 6.6e-50 200.7 118 83.1
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 8.6e-50 200.3 117 82.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-49 199.9 117 82.1
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-49 199.9 117 82.1
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.1e-49 199.9 117 82.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.1e-49 199.9 121 81.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.1e-49 199.9 118 81.4
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.1e-49 199.9 116 86.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-49 199.5 117 82.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-49 199.5 117 82.1
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.5e-49 199.5 117 82.9
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.9e-49 199.1 118 80.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.9e-49 199.1 121 82.6
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.9e-49 199.1 117 82.1
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.9e-49 199.1 118 83.9
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 4.3e-49 198.0 115 82.6
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.3e-49 198.0 118 83.1
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 9.5e-49 196.8 116 81.9
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 9.5e-49 196.8 117 80.3
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.2e-48 196.4 118 79.7
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.2e-48 196.4 119 81.5
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.6e-48 196.1 115 81.7
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-48 196.1 120 77.5
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.6e-48 194.9 116 80.2
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 4.7e-48 194.5 118 78.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 4.7e-48 194.5 117 82.1
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.2e-48 194.1 110 86.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 8.0e-48 193.7 114 82.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.0e-48 193.7 122 78.7
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 8.0e-48 193.7 119 77.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-47 193.4 118 81.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-47 193.0 118 80.5
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.8e-47 192.6 110 87.3
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-47 191.8 118 80.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.1e-47 191.8 118 78.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.0e-47 191.4 118 76.3
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.8e-47 190.7 117 76.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.8e-47 190.7 117 76.9
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.8e-47 190.7 117 79.5
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.8e-47 190.7 118 80.5
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.9e-47 190.3 117 79.5
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.5e-46 189.5 105 88.6
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.5e-46 189.5 118 78.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.5e-46 189.5 117 78.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.0e-46 189.1 117 76.1
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.4e-46 188.3 119 79.0
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.4e-46 188.0 108 88.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.3e-45 186.4 117 75.2
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.3e-45 186.4 117 78.6
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.7e-45 186.0 117 76.9
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.7e-45 186.0 120 78.3
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.7e-45 184.9 118 77.1
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.1e-44 183.3 109 79.8
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.9e-44 182.6 115 80.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 9.2e-44 180.3 116 75.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.6e-43 179.5 98 92.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 7.8e-43 177.2 119 74.8
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.3e-42 176.4 118 76.3
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 3.0e-42 175.3 117 76.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.6e-42 174.1 122 73.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.1e-41 173.3 101 81.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.5e-41 172.9 116 75.0
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.9e-41 172.6 117 76.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.6e-41 171.0 118 73.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.6e-40 169.5 98 85.7
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 6.2e-40 167.5 98 84.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.1e-40 167.2 99 84.8
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.4e-39 166.4 121 71.9
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 8.9e-39 163.7 119 71.4
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 8.9e-39 163.7 118 71.2
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.6e-38 162.2 90 84.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.6e-38 162.2 95 86.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.6e-38 162.2 107 73.8
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.7e-37 159.5 117 70.9
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.4e-36 155.6 118 67.8
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.2e-36 155.2 108 71.3
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 7.1e-36 154.1 98 77.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 7.1e-36 154.1 98 77.6
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.9e-34 148.3 86 84.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 4.3e-33 144.8 101 70.3
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 5.6e-33 144.4 97 74.2
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.3e-33 144.1 118 66.9
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 6.2e-32 141.0 78 84.6
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 8.1e-32 140.6 113 59.3
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 6.8e-31 137.5 107 64.5
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.5e-30 136.3 78 80.8
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.6e-30 135.6 102 66.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.4e-30 135.2 81 76.5
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.4e-30 134.8 113 57.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.7e-29 132.9 118 54.2
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.8e-29 131.7 115 54.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.4e-29 131.0 117 53.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.1e-28 130.2 120 58.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.4e-28 129.8 118 54.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 7.1e-28 127.5 118 52.5
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 7.1e-28 127.5 88 65.9
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.1e-27 125.9 118 55.9
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 2.7e-27 125.6 116 56.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.3e-26 123.2 116 56.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 6.6e-26 120.9 85 71.8
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.3e-25 118.6 101 57.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.6e-24 116.3 88 68.2
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.4e-23 113.2 130 46.9
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.0e-23 111.7 121 47.9
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.4e-22 108.2 76 76.3
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 7.1e-20 100.9 54 85.2
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 6.0e-19 97.8 61 77.0
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.7e-11 72.4 57 63.2
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.1e-09 67.0 54 53.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.3e-09 65.5 75 48.0
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 7.6e-06 54.3 110 32.7
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.0e-05 53.9 110 34.5


User provided reference genes

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