Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.1e-290 1001.1 518 100.0
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.0e-216 756.9 500 79.0
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-199 700.3 501 72.1
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 3.7e-195 685.3 497 71.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 8.3e-195 684.1 502 69.1
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.4e-194 683.3 514 70.6
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.2e-190 670.2 515 68.2
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.1e-186 657.1 503 69.8
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.6e-185 653.3 501 68.9
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.1e-185 652.9 474 70.3
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.5e-183 646.0 500 67.4
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 3.6e-182 642.1 501 65.7
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 8.1e-182 641.0 502 68.1
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.8e-181 639.8 501 68.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.2e-180 637.1 505 66.9
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 2.0e-180 636.3 501 68.5
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.4e-180 635.2 505 66.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 7.6e-180 634.4 505 66.7
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.3e-179 633.6 443 72.5
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.3e-179 633.6 521 64.9
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.2e-179 632.9 505 66.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.2e-179 632.9 501 67.5
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.4e-178 630.2 501 67.9
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.9e-178 629.8 498 67.9
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.2e-178 629.0 497 67.0
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 4.2e-178 628.6 486 65.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 4.2e-178 628.6 602 57.5
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 5.4e-178 628.2 510 66.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 7.1e-178 627.9 498 67.5
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.6e-177 626.7 492 65.4
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.0e-176 624.0 500 67.2
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 8.7e-176 620.9 492 64.4
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 2.8e-174 615.9 492 66.5
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 3.6e-174 615.5 492 67.7
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.2e-174 614.8 498 64.5
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 3.4e-172 609.0 494 64.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 7.6e-172 607.8 501 65.5
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 7.6e-172 607.8 498 66.7
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.3e-171 607.1 498 64.1
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 4.9e-171 605.1 501 65.7
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.2e-170 602.4 501 65.9
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 9.3e-170 600.9 497 62.0
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.2e-169 600.5 492 62.6
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 4.6e-169 598.6 498 63.1
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 8.7e-168 594.3 494 62.8
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.5e-167 592.8 508 62.8
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 2.5e-167 592.8 494 62.8
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 9.6e-167 590.9 451 66.3
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 9.0e-165 584.3 501 64.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.2e-164 583.9 495 62.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.6e-164 582.8 497 62.8
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.5e-164 582.0 517 61.1
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 4.5e-164 582.0 454 67.0
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 5.8e-164 581.6 497 61.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 5.8e-164 581.6 454 67.0
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.4e-162 577.0 516 60.7
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 9.3e-162 574.3 517 60.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.6e-161 573.5 475 62.7
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 5.1e-160 568.5 504 59.7
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.6e-159 565.1 509 60.9
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.6e-159 565.1 448 64.3
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.6e-158 563.5 505 59.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.8e-158 562.8 503 58.6
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 8.1e-158 561.2 450 63.6
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.4e-157 560.5 451 64.3
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 3.1e-157 559.3 495 60.8
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 9.0e-157 557.8 464 62.3
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.5e-156 557.0 501 58.7
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 7.6e-156 554.7 490 58.8
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.7e-155 553.5 480 60.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.7e-155 553.5 435 66.7
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 2.2e-155 553.1 500 59.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 3.8e-155 552.4 487 60.0
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.6e-153 547.0 506 58.3
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 2.1e-153 546.6 483 59.2
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.8e-152 543.5 426 67.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.1e-151 540.8 513 57.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.1e-150 536.6 508 57.1
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.1e-150 536.6 508 57.1
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.1e-150 536.6 501 55.9
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 6.3e-150 535.0 496 59.7
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.8e-149 533.5 396 70.5
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.9e-149 531.6 500 55.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 9.0e-149 531.2 489 58.3
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 3.4e-148 529.3 442 64.5
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.9e-147 526.2 497 57.5
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 3.8e-147 525.8 506 56.9
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 6.5e-147 525.0 511 56.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 8.5e-147 524.6 452 62.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.9e-146 523.5 511 56.4
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 4.2e-146 522.3 504 57.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.6e-145 520.4 502 58.0
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.9e-144 515.8 414 66.9
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 6.7e-144 515.0 445 61.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 8.7e-144 514.6 506 56.5
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.1e-143 514.2 485 57.3
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.1e-143 514.2 493 59.8
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.5e-143 513.8 455 60.7
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.5e-143 513.1 501 57.9
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.6e-142 510.4 456 59.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.4e-141 507.3 503 55.5
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 5.3e-141 505.4 453 59.8
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.2e-140 504.2 496 56.9
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.9e-139 499.6 438 61.0
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.9e-138 496.9 504 54.4
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 6.1e-137 491.9 501 55.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-135 487.6 499 54.5
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 2.6e-135 486.5 499 54.3
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.4e-135 485.7 502 54.4
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 8.2e-134 481.5 465 57.8
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.0e-131 474.6 507 51.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.7e-131 473.8 499 53.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 5.7e-127 458.8 527 51.2
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.1e-125 453.0 496 53.2
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.0e-123 448.0 328 66.2
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.8e-123 446.0 500 50.8
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-121 441.0 427 55.5
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.1e-121 440.3 429 57.8
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.3e-115 421.0 387 61.8
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.5e-115 418.3 482 49.4
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.0e-112 409.8 439 54.2
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-105 387.5 315 63.8
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.0e-104 384.8 362 59.7
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.0e-104 383.3 343 58.6
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.3e-102 377.9 483 44.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-97 360.1 312 59.9
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 4.9e-94 349.4 419 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 5.4e-93 345.9 496 42.1
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.6e-89 334.3 206 77.2
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.4e-87 326.6 309 59.2
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.2e-76 291.6 300 52.7
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 8.6e-75 285.4 224 62.9
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 1.1e-74 285.0 314 47.5
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.7e-73 279.6 237 66.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 3.4e-71 273.5 191 71.2
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.8e-64 251.1 502 33.3
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.9e-54 217.2 196 59.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 5.5e-45 186.4 131 68.7
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.9e-37 161.4 414 29.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.2e-36 158.7 279 34.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 5.1e-35 153.3 127 61.4
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 8.5e-30 136.0 83 74.7
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.6e-28 131.7 207 38.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-24 119.0 84 65.5
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.4e-24 118.6 129 55.0
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 6.9e-24 116.3 81 66.7
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 5.0e-22 110.2 147 47.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 6.3e-17 93.2 67 65.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 9.1e-16 89.4 64 65.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 4.5e-15 87.0 64 64.1
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 4.2e-13 80.5 57 68.4
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-09 68.6 46 65.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 6.3e-09 66.6 177 27.1
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 7.7e-07 59.7 101 39.6
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 1.0e-06 59.3 102 39.2
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-06 58.9 66 48.5
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 2.2e-06 58.2 101 39.6
MBI08_g26134_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D005748 6.5e-06 56.6 39 69.2
MBI08_g45379_MAGBIO Magnolia biondii HOM05D000517 ORTHO05D005748 6.5e-06 56.6 39 69.2


User provided reference genes

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