Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.6e-36 154.8 78 100.0
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.7e-14 81.3 58 67.2
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 8.3e-14 80.1 61 65.6
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-13 79.0 52 71.2
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.4e-13 78.6 62 61.3
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 3.2e-13 78.2 64 64.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 3.2e-13 78.2 62 59.7
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.1e-13 77.8 62 59.7
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.0e-12 75.5 57 63.2
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.0e-12 75.5 57 63.2
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.9e-12 73.9 56 62.5
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.9e-12 73.9 56 62.5
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.9e-12 73.9 56 62.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.8e-12 73.6 57 63.2
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.3e-11 72.8 56 60.7
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.3e-11 72.8 56 60.7
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.7e-11 72.4 56 64.3
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.7e-11 72.4 55 61.8
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.3e-11 72.0 53 62.3
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.9e-11 71.6 53 62.3
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 5.0e-11 70.9 56 62.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 8.6e-11 70.1 55 63.6
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 8.6e-11 70.1 55 58.2
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 8.6e-11 70.1 62 58.1
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-10 69.3 56 62.5
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-10 69.3 56 62.5
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.5e-10 68.6 58 58.6
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 4.3e-10 67.8 62 51.6
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 4.3e-10 67.8 53 54.7
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 5.6e-10 67.4 54 55.6
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 7.3e-10 67.0 56 60.7
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 7.3e-10 67.0 56 60.7
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 7.3e-10 67.0 56 60.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 7.3e-10 67.0 54 57.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-09 66.2 56 55.4
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-09 66.2 55 56.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.2e-09 66.2 53 58.5
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.2e-09 66.2 56 60.7
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.2e-09 66.2 56 58.9
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.6e-09 65.9 56 55.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.1e-09 65.5 54 57.4
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 2.1e-09 65.5 58 55.2
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-09 65.1 58 56.9
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.6e-09 64.7 56 58.9
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 4.7e-09 64.3 54 55.6
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.7e-09 64.3 54 55.6
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 6.2e-09 63.9 53 58.5
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 6.2e-09 63.9 52 57.7
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.2e-09 63.9 57 57.9
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.2e-09 63.9 57 57.9
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 6.2e-09 63.9 57 56.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 8.0e-09 63.5 54 59.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.0e-08 63.2 56 57.1
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.0e-08 63.2 56 57.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.0e-08 63.2 61 55.7
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-08 62.8 53 54.7
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-08 62.8 53 54.7
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.4e-08 62.8 53 58.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 3.1e-08 61.6 56 57.1
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 4.0e-08 61.2 53 58.5
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 5.2e-08 60.8 56 53.6
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 5.2e-08 60.8 51 56.9
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.2e-07 59.7 66 48.5
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.5e-07 59.3 54 53.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 2.0e-07 58.9 66 53.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 2.0e-07 58.9 60 50.0
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.0e-07 58.9 66 53.0
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.0e-07 58.9 53 52.8
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 3.4e-07 58.2 54 51.9
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.4e-07 58.2 53 52.8
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.4e-07 58.2 53 52.8
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 4.4e-07 57.8 60 48.3
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 5.8e-07 57.4 60 48.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 7.5e-07 57.0 60 50.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 7.5e-07 57.0 60 50.0
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 7.5e-07 57.0 60 50.0
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 7.5e-07 57.0 50 54.0
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.3e-06 56.2 54 53.7
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.3e-06 56.2 54 53.7
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-06 56.2 60 48.3
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.3e-06 56.2 60 48.3
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 3.7e-06 54.7 51 52.9
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 4.9e-06 54.3 52 53.8
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 4.9e-06 54.3 56 48.2
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 8.3e-06 53.5 54 50.0


User provided reference genes

Program Settings