Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 0.0e+00 1206.8 611 100.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 0.0e+00 1081.6 622 88.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 7.6e-296 1020.0 615 85.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.5e-291 1005.0 620 83.1
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 6.9e-289 996.9 608 85.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.6e-285 985.7 610 82.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.5e-285 984.6 612 82.8
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 7.8e-285 983.4 607 83.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.5e-283 979.2 611 81.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.3e-283 978.0 619 82.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.0e-280 968.8 605 82.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 5.8e-280 967.2 615 80.3
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.6e-280 966.8 602 82.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.9e-279 964.9 617 80.9
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-278 963.0 614 80.6
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.4e-278 962.6 589 83.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.9e-278 962.2 600 82.0
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.7e-277 958.4 602 82.6
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.6e-277 957.6 621 81.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 6.0e-277 957.2 613 80.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.3e-276 956.1 611 80.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.8e-276 955.7 607 81.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 5.1e-276 954.1 599 82.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 5.1e-276 954.1 607 81.1
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 5.1e-276 954.1 609 79.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.5e-275 952.6 605 81.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 9.6e-275 949.9 591 82.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.1e-274 948.7 619 79.6
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.7e-274 948.0 607 80.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.4e-273 945.3 625 80.5
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 2.4e-273 945.3 628 78.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.1e-273 944.9 611 79.7
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.9e-272 939.9 610 78.7
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.9e-271 938.3 623 78.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 8.4e-271 936.8 621 79.4
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-270 936.4 607 79.1
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.4e-270 936.0 610 78.4
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-270 936.0 609 80.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.9e-270 935.6 608 79.9
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.7e-269 931.8 587 81.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.6e-269 931.0 583 81.3
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.6e-269 931.0 606 79.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.6e-269 931.0 606 79.4
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.6e-269 931.0 606 79.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.0e-269 930.6 604 80.3
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.0e-269 930.6 609 78.7
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.3e-268 929.5 616 80.5
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.7e-268 927.2 607 78.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 8.7e-268 926.8 601 80.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.5e-267 926.0 616 80.2
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.9e-267 925.6 617 77.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 9.6e-267 923.3 607 78.6
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 9.6e-267 923.3 609 77.8
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.8e-266 921.8 605 78.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.4e-265 918.7 588 79.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.3e-265 917.5 603 79.8
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.2e-264 916.4 629 77.3
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-264 915.6 603 78.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 7.6e-264 913.7 585 80.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.0e-263 913.3 609 76.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.0e-263 913.3 574 81.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.7e-263 912.5 578 80.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.9e-263 911.8 612 77.1
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.4e-262 909.4 588 79.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.1e-262 907.1 597 78.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.7e-261 905.2 588 78.9
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.7e-261 905.2 573 80.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.6e-261 904.4 611 77.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 6.0e-261 904.0 604 78.3
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.5e-259 899.4 545 85.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.6e-258 896.0 588 77.6
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.6e-258 896.0 605 78.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.4e-257 892.1 593 77.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.2e-254 881.7 612 74.2
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.3e-254 880.2 594 76.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-253 879.0 523 83.9
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.3e-252 876.3 610 74.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.3e-252 875.5 604 74.0
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 3.7e-250 868.2 610 74.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.1e-249 864.8 580 77.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.9e-249 864.0 578 75.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.5e-248 862.8 601 73.9
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.0e-248 862.4 592 75.2
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.7e-248 860.5 607 74.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.4e-246 856.3 612 73.5
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.9e-246 855.9 593 75.0
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 7.2e-246 854.0 603 74.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-245 853.2 604 73.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 6.1e-245 850.9 687 66.7
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.4e-244 849.7 609 73.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.3e-244 849.0 578 76.5
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 5.7e-243 844.3 587 74.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 9.7e-243 843.6 574 73.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.7e-242 842.8 587 74.4
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.2e-242 842.4 609 72.9
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.2e-242 840.5 599 72.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.8e-241 839.3 596 74.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.4e-241 839.0 578 75.4
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 5.3e-241 837.8 602 73.1
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 9.1e-241 837.0 587 74.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 9.1e-241 837.0 587 74.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 9.1e-241 837.0 594 71.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.0e-240 835.9 607 72.8
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-239 832.8 603 72.6
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.9e-238 829.3 596 72.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.6e-237 826.2 600 71.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.0e-236 823.5 585 73.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-236 823.2 607 71.0
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.5e-235 819.7 628 69.1
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.0e-235 819.3 608 70.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.4e-235 818.1 562 73.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-234 816.2 559 74.1
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 5.3e-233 811.2 593 71.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 9.1e-233 810.4 621 69.7
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-231 807.0 590 71.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.2e-231 805.8 610 72.3
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.1e-229 799.3 589 73.2
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.5e-227 793.1 603 68.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 8.2e-226 787.3 563 74.6
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.5e-224 781.9 599 68.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 5.0e-223 778.1 528 75.0
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.1e-222 776.9 503 78.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.2e-221 773.5 601 66.7
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-219 765.8 596 68.1
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.3e-218 761.1 587 69.0
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-216 756.1 535 71.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-213 746.9 519 71.9
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 4.7e-213 745.0 608 64.8
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.4e-211 738.4 616 64.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.2e-210 736.1 519 72.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 4.1e-209 731.9 419 86.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.5e-208 728.8 584 68.8
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 5.0e-207 724.9 412 86.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.8e-204 716.5 607 64.4
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.2e-203 713.8 414 84.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 7.5e-203 711.1 556 67.3
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-202 709.9 576 64.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.2e-202 709.5 418 85.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-201 707.2 527 67.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-201 707.2 527 68.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-193 679.5 527 65.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.6e-192 675.2 513 68.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.1e-189 666.4 495 67.9
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-186 657.1 528 63.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.3e-182 642.1 467 75.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 5.4e-169 598.6 571 54.8
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.6e-160 568.9 383 74.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 5.6e-158 562.0 476 59.7
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.2e-155 554.3 351 82.9
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 4.2e-153 545.8 524 57.8
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.2e-137 493.0 323 79.9
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.6e-136 489.6 465 58.1
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.1e-108 396.7 320 65.9
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 9.8e-78 295.4 157 93.0
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.5e-67 260.4 145 90.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.4e-47 194.5 164 59.1
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.5e-46 191.8 164 56.7
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 6.4e-45 186.4 161 56.5
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.2e-44 183.7 161 55.9
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.5e-41 175.3 131 67.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 8.1e-40 169.5 98 85.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.7e-27 127.9 95 66.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.2e-24 116.3 95 61.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.4e-23 115.5 115 56.5
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-22 112.1 312 28.5
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-21 108.2 487 24.0
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.5e-20 103.6 60 86.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-17 95.9 286 26.9
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 5.7e-17 93.6 86 52.3
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.8e-15 88.6 70 72.9
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-15 88.2 190 34.2
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 3.1e-15 87.8 126 35.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 4.5e-14 84.0 100 51.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.3e-10 71.6 74 58.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.3e-10 71.6 65 52.3
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-06 58.5 62 50.0


User provided reference genes

Program Settings