Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 7.7e-80 300.4 153 100.0
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 6.6e-31 137.9 80 93.8
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.1e-30 137.1 80 93.8
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 4.3e-22 108.6 81 79.0
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 5.6e-22 108.2 79 79.7
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 5.6e-22 108.2 78 76.9
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.8e-21 105.9 80 77.5
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 2.8e-21 105.9 125 52.8
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 2.8e-21 105.9 68 80.9
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 4.7e-21 105.1 80 76.2
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 6.2e-21 104.8 83 71.1
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 8.1e-21 104.4 76 72.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.1e-20 104.0 80 75.0
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.8e-20 103.2 70 80.0
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.3e-20 102.8 70 82.9
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 3.1e-20 102.4 79 74.7
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 4.0e-20 102.1 128 50.8
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 5.2e-20 101.7 68 75.0
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 6.8e-20 101.3 82 70.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 1.2e-19 100.5 70 74.3
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 1.5e-19 100.1 69 82.6
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.5e-19 100.1 80 68.8
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 2.0e-19 99.8 79 68.4
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 2.6e-19 99.4 69 79.7
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 2.6e-19 99.4 69 73.9
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 3.4e-19 99.0 78 70.5
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 5.8e-19 98.2 85 67.1
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 5.8e-19 98.2 71 77.5
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 5.8e-19 98.2 70 77.1
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 7.5e-19 97.8 96 66.7
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 9.8e-19 97.4 70 74.3
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 1.3e-18 97.1 70 72.9
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.3e-18 97.1 66 86.4
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.3e-18 97.1 80 75.0
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 1.7e-18 96.7 81 71.6
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 1.7e-18 96.7 72 79.2
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 2.2e-18 96.3 80 65.0
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.2e-18 96.3 69 78.3
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.2e-18 96.3 69 78.3
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.2e-18 96.3 66 84.8
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.9e-18 95.9 85 65.9
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 2.9e-18 95.9 70 77.1
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 2.9e-18 95.9 70 77.1
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.9e-18 95.9 135 51.1
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 2.9e-18 95.9 135 51.1
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.9e-18 95.9 78 70.5
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.9e-18 95.9 78 70.5
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 3.7e-18 95.5 70 75.7
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 4.9e-18 95.1 76 72.4
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 8.3e-18 94.4 85 65.9
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 8.3e-18 94.4 71 71.8
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 1.4e-17 93.6 66 78.8
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.4e-17 93.6 75 69.3
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.4e-17 93.6 78 66.7
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 1.9e-17 93.2 70 72.9
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 2.4e-17 92.8 87 66.7
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 7.1e-17 91.3 66 77.3
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 7.1e-17 91.3 66 77.3
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 9.2e-17 90.9 77 62.3
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 9.2e-17 90.9 66 77.3
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 9.2e-17 90.9 120 51.7
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.6e-16 90.1 71 70.4
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 2.1e-16 89.7 108 46.3
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 3.5e-16 89.0 66 75.8
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 4.6e-16 88.6 79 65.8
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 6.0e-16 88.2 76 67.1
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 1.7e-15 86.7 132 47.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 2.3e-15 86.3 79 64.6
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 2.3e-15 86.3 141 48.2
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 2.3e-15 86.3 65 72.3
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 3.0e-15 85.9 78 65.4
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 3.0e-15 85.9 68 72.1
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 6.6e-15 84.7 70 74.3
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.5e-14 83.6 70 72.9
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.5e-14 83.6 79 63.3
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 2.5e-14 82.8 68 73.5
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 2.5e-14 82.8 68 73.5
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 9.5e-14 80.9 69 69.6
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 4.0e-12 75.5 62 66.1
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 6.8e-12 74.7 53 67.9
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 8.9e-12 74.3 76 55.3
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 1.2e-11 73.9 118 44.1
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 2.6e-11 72.8 77 53.2
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.6e-11 72.8 59 61.0
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 9.9e-11 70.9 85 51.8
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 7.1e-09 64.7 64 60.9
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 6.0e-08 61.6 64 57.8
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 2.5e-06 56.2 98 41.8
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 3.3e-06 55.8 138 37.0
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 4.3e-06 55.5 53 62.3
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 7.3e-06 54.7 99 39.4


User provided reference genes

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