Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.3e-48 194.9 145 100.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.1e-31 139.4 146 69.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.8e-23 111.7 107 75.7
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-22 109.0 71 76.1
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.2e-21 107.1 80 70.0
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.5e-21 106.7 70 77.1
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.5e-21 105.1 108 74.1
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 5.8e-21 104.8 122 59.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-20 104.0 68 75.0
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-20 102.8 68 73.5
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.9e-20 102.4 68 73.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 4.9e-20 101.7 84 64.3
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 6.5e-20 101.3 47 100.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.5e-20 101.3 156 54.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 8.4e-20 100.9 52 86.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.5e-19 99.4 63 76.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.5e-19 99.4 63 76.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.5e-19 99.4 63 76.2
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 2.5e-19 99.4 63 76.2
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.5e-19 99.4 52 80.8
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.2e-19 99.0 88 84.1
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 4.2e-19 98.6 49 85.7
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 4.2e-19 98.6 106 56.6
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.2e-19 98.6 149 66.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 5.5e-19 98.2 64 75.0
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 7.1e-19 97.8 52 86.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 7.1e-19 97.8 65 75.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 7.1e-19 97.8 65 75.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 7.1e-19 97.8 61 75.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 7.1e-19 97.8 62 74.2
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 9.3e-19 97.4 52 86.5
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-18 97.1 48 91.7
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-18 97.1 48 91.7
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-18 97.1 48 91.7
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.6e-18 96.7 52 84.6
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.6e-18 96.7 79 86.1
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.6e-18 96.7 63 79.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.6e-18 96.7 51 88.2
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.6e-18 96.7 62 75.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.1e-18 96.3 108 68.5
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 2.1e-18 96.3 106 67.0
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.7e-18 95.9 51 90.2
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.7e-18 95.9 52 82.7
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.5e-18 95.5 62 74.2
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 3.5e-18 95.5 58 77.6
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 4.6e-18 95.1 51 88.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.0e-18 94.7 61 73.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 6.0e-18 94.7 47 89.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.0e-18 94.7 89 71.9
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.9e-18 94.4 74 64.9
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.8e-17 93.2 60 81.7
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.3e-17 92.8 112 64.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.3e-17 92.8 112 64.3
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 3.0e-17 92.4 45 91.1
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 3.0e-17 92.4 52 80.8
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.9e-17 92.0 114 46.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.1e-17 91.7 101 51.5
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 5.1e-17 91.7 65 70.8
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 8.7e-17 90.9 69 66.7
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 8.7e-17 90.9 69 69.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.1e-16 90.5 47 89.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.5e-16 90.1 145 53.1
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.9e-16 89.7 63 71.4
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-16 89.4 47 85.1
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-16 89.4 46 87.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-16 89.4 46 87.0
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.5e-16 89.4 44 90.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.5e-16 89.4 44 90.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.5e-16 89.4 44 90.9
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 5.7e-16 88.2 48 85.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 5.7e-16 88.2 71 60.6
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 5.7e-16 88.2 43 90.7
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 5.7e-16 88.2 59 78.0
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.7e-16 88.2 77 88.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 9.7e-16 87.4 44 93.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.3e-15 87.0 152 54.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.3e-15 87.0 52 84.6
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.6e-15 86.7 115 53.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.6e-15 86.7 44 90.9
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.6e-15 86.7 113 65.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.2e-15 86.3 46 82.6
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.8e-15 85.9 44 90.9
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.8e-15 85.9 44 90.9
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.8e-15 85.9 44 90.9
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.8e-15 85.9 74 60.8
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-15 85.9 43 93.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 3.7e-15 85.5 49 83.7
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.7e-15 85.5 43 93.0
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 4.8e-15 85.1 44 93.2
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 6.3e-15 84.7 60 70.0
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 6.3e-15 84.7 43 90.7
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-14 84.0 40 95.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.4e-14 83.6 40 92.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 3.1e-14 82.4 59 69.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.1e-14 82.4 56 75.0
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.1e-14 82.4 104 70.2
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 4.1e-14 82.0 58 69.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 9.0e-14 80.9 102 49.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 9.0e-14 80.9 64 64.1
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 40 90.0
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.5e-13 80.1 41 85.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.5e-13 80.1 43 83.7
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.0e-13 79.7 55 70.9
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.0e-13 79.7 44 84.1
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.0e-13 79.7 44 79.5
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.4e-13 79.0 41 90.2
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.5e-13 78.6 39 84.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 4.5e-13 78.6 60 70.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 7.7e-13 77.8 54 72.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.3e-12 77.0 85 69.4
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 3.8e-12 75.5 68 64.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.8e-12 75.5 49 79.6
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 5.0e-12 75.1 125 41.6
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 6.5e-12 74.7 59 69.5
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 6.5e-12 74.7 59 69.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.5e-12 74.7 36 88.9
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 8.5e-12 74.3 72 62.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 8.5e-12 74.3 129 54.3
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 8.5e-12 74.3 64 65.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.4e-11 73.6 54 70.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.5e-11 72.8 35 88.6
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 3.2e-11 72.4 39 79.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.2e-11 72.0 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 4.2e-11 72.0 35 88.6
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.2e-10 70.5 42 78.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.6e-10 68.9 36 83.3
Dinv38038 Davidia involucrata HOM05D005853 ORTHO05D007308 2.0e-08 63.2 46 73.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 2.0e-08 63.2 43 65.1
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 9.7e-08 60.8 53 54.7
Actinidia21670 Actinidia chinensis HOM05D005853 ORTHO05D007308 1.4e-06 57.0 54 53.7
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 1.8e-06 56.6 34 73.5


User provided reference genes

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