Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 8.1e-213 743.4 362 100.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.3e-165 586.6 359 81.1
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.7e-141 505.4 363 68.6
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.3e-127 459.5 366 64.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.0e-123 446.4 367 63.2
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.6e-122 441.4 382 60.7
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-120 437.2 365 62.7
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-120 437.2 365 62.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.5e-118 430.3 377 60.7
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.4e-116 421.8 367 59.4
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.6e-115 420.2 368 60.6
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 7.8e-115 417.9 367 60.8
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.5e-113 412.9 375 57.6
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 4.3e-113 412.1 368 60.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.3e-111 406.4 376 56.9
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 5.2e-111 405.2 355 60.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 6.8e-111 404.8 365 58.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.7e-109 400.2 356 58.7
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.7e-109 400.2 364 59.3
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.4e-109 398.3 366 57.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-108 396.7 357 57.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.4e-108 396.4 366 58.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 9.2e-108 394.4 357 57.4
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.0e-106 391.0 362 59.1
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.3e-106 390.6 364 58.5
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 3.0e-106 389.4 371 57.4
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.1e-106 388.7 371 57.4
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 6.6e-106 388.3 366 59.8
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.6e-106 388.3 367 58.0
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.9e-105 386.7 357 58.3
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.5e-105 386.3 362 55.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.3e-105 386.0 368 56.5
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 1.2e-104 384.0 370 56.2
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.6e-104 383.6 356 57.6
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.6e-104 383.6 366 57.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.7e-104 382.1 363 56.7
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 4.7e-104 382.1 368 55.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 6.2e-104 381.7 367 55.6
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 8.1e-104 381.3 356 57.0
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 8.1e-104 381.3 365 56.4
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.4e-103 380.6 367 55.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.3e-103 379.8 362 55.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 3.1e-103 379.4 362 55.5
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-103 379.4 363 57.0
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 5.2e-103 378.6 363 57.3
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.8e-103 378.3 361 55.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 6.8e-103 378.3 368 54.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-102 377.1 366 54.4
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.6e-102 376.3 367 54.2
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.4e-102 375.6 367 54.0
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 7.6e-102 374.8 378 53.4
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 7.6e-102 374.8 378 53.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 7.6e-102 374.8 355 55.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.8e-101 372.5 368 55.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 4.9e-101 372.1 378 52.1
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 6.4e-101 371.7 354 58.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.1e-100 370.9 362 55.5
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.4e-100 370.5 363 54.8
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-100 370.5 369 53.7
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 7.1e-100 368.2 362 52.5
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.2e-100 367.9 393 50.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.2e-100 367.9 393 50.6
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-99 367.5 396 50.5
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.7e-99 366.3 291 61.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.5e-99 365.9 358 55.3
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.6e-99 365.5 362 51.4
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.0e-98 364.4 370 51.6
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.0e-98 364.4 373 52.8
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-98 364.0 399 52.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.9e-98 362.5 340 56.2
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 5.1e-98 362.1 365 52.9
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 8.6e-98 361.3 368 54.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.1e-97 360.9 369 52.0
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.9e-97 360.1 361 53.7
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.5e-97 359.8 357 54.1
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 3.3e-97 359.4 363 52.1
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.3e-97 359.4 360 53.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.3e-97 359.0 346 54.9
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.6e-96 357.1 358 52.5
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.8e-96 356.3 375 50.1
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 8.1e-96 354.8 364 53.6
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 6.9e-95 351.7 271 63.8
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.6e-94 349.7 359 53.5
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.4e-94 349.0 272 62.1
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.7e-93 347.1 355 52.4
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.8e-93 345.9 366 51.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 8.4e-93 344.7 365 49.0
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.9e-92 343.6 358 51.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.2e-92 342.4 282 63.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.5e-91 339.3 362 52.2
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.0e-90 337.8 354 52.3
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.9e-90 335.9 356 53.1
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 5.1e-90 335.5 368 50.0
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 8.7e-90 334.7 362 51.1
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.9e-89 333.6 280 58.6
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 5.6e-89 332.0 356 50.8
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 9.6e-89 331.3 354 50.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 8.1e-88 328.2 354 50.0
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.8e-87 327.0 354 50.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 4.0e-87 325.9 354 49.7
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 6.9e-87 325.1 270 58.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 9.0e-87 324.7 361 50.7
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-86 323.6 359 50.7
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.0e-86 323.6 358 51.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.4e-86 322.8 323 53.6
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.6e-86 321.6 364 51.6
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 7.6e-86 321.6 361 51.0
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 9.9e-86 321.2 281 54.8
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.7e-85 320.5 365 51.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 6.4e-85 318.5 357 51.0
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 6.4e-85 318.5 366 49.5
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 6.4e-85 318.5 363 49.3
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.2e-84 315.8 316 55.1
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.2e-84 315.8 365 48.8
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 7.1e-84 315.1 293 55.3
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-83 313.9 361 48.2
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.7e-83 313.2 366 49.5
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 6.0e-83 312.0 367 49.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.0e-82 311.2 313 49.8
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.0e-82 311.2 251 61.0
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.8e-82 310.5 365 49.3
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.9e-82 309.3 366 49.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 5.1e-82 308.9 356 48.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-81 307.8 296 56.4
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.5e-81 307.4 356 49.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.3e-80 304.3 361 47.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.8e-80 302.4 280 55.4
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-78 297.0 260 60.0
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.4e-78 296.2 318 53.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 6.0e-75 285.4 327 51.1
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 8.7e-74 281.6 281 54.4
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 7.4e-73 278.5 372 45.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.1e-72 276.9 277 52.7
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.1e-72 276.9 277 52.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-71 274.2 372 46.5
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.4e-71 274.2 277 52.3
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.8e-69 266.2 318 46.5
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 8.4e-69 265.0 232 56.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.1e-68 261.9 357 43.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.6e-67 260.8 377 38.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.7e-67 260.0 317 47.6
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 5.1e-66 255.8 240 53.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.9e-60 237.3 321 42.1
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.5e-60 236.9 263 49.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.6e-59 233.0 249 48.6
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 2.3e-58 230.3 336 41.1
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.5e-57 226.9 183 65.0
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.7e-56 223.0 216 54.2
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-49 201.4 324 39.2
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.1e-49 201.4 336 38.1
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.5e-46 191.0 215 50.2
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.1e-44 184.9 450 30.2
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.3e-40 169.1 101 83.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-38 164.9 181 47.0
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.6e-38 164.5 255 39.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.5e-38 162.9 117 59.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.2e-36 156.8 161 50.3
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.7e-35 152.9 153 54.9
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 6.1e-35 152.5 167 52.7
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.1e-31 141.7 209 43.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 4.1e-31 139.8 159 49.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.5e-28 131.3 209 42.1
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.6e-27 127.9 285 29.1
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.0e-21 108.6 76 63.2
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 6.5e-21 105.9 89 57.3
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.6e-19 101.3 83 57.8
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.1e-19 100.9 112 44.6
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.3e-18 97.4 105 43.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 6.8e-18 95.9 291 27.5
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 5.7e-17 92.8 69 59.4
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.5e-17 92.4 69 59.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.9e-16 89.7 111 41.4
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-15 87.0 132 41.7
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-14 84.3 88 48.9
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.0e-14 84.3 48 81.2
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 3.5e-14 83.6 132 31.8
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 5.0e-13 79.7 144 36.1
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 5.0e-13 79.7 45 82.2
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 7.3e-12 75.9 120 35.8
TAR623G0955 Trochodendron aralioides HOM05D003781 ORTHO05D415779 4.4e-09 66.6 58 56.9
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 5.8e-09 66.2 43 67.4
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 4.1e-07 60.1 377 24.1
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 4.1e-07 60.1 55 47.3


User provided reference genes

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