Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 9.3e-181 636.7 316 100.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.1e-144 516.9 327 77.7
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.6e-143 512.3 323 77.7
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 5.9e-143 511.1 327 77.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.8e-142 508.4 327 76.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 7.2e-141 504.2 317 77.6
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.1e-140 502.7 327 75.8
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 6.1e-140 501.1 324 76.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.1e-140 501.1 327 76.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.0e-139 500.4 331 74.0
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.4e-139 500.0 332 73.8
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.0e-139 498.4 318 78.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.8e-139 497.7 328 75.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.8e-139 497.7 337 73.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.0e-138 496.1 320 75.6
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.4e-138 495.4 335 73.4
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.4e-138 495.4 327 74.9
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.7e-137 493.0 326 73.9
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.8e-137 492.3 323 73.7
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.8e-137 492.3 335 72.8
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 3.7e-137 491.9 324 74.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.3e-137 490.7 331 71.9
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 8.3e-137 490.7 323 74.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.1e-136 490.3 318 77.0
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.1e-136 490.3 327 74.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.4e-136 490.0 335 73.1
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.8e-136 489.6 330 73.6
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.4e-136 489.2 322 75.5
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.3e-136 488.0 324 74.1
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.3e-136 488.0 321 76.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 7.0e-136 487.6 324 73.1
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.6e-135 486.5 331 75.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.6e-135 486.5 318 73.9
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.0e-135 486.1 277 83.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-135 486.1 315 76.8
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.0e-135 486.1 319 76.2
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 3.5e-135 485.3 316 76.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 3.5e-135 485.3 339 72.0
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.5e-135 485.3 331 74.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 4.5e-135 485.0 315 76.5
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.9e-135 484.6 292 81.5
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 7.7e-135 484.2 316 76.3
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 7.7e-135 484.2 339 71.1
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.0e-134 483.8 328 72.6
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.0e-134 483.8 328 72.6
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-134 483.4 315 76.2
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.3e-134 483.4 290 80.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.3e-134 483.4 325 75.4
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.3e-134 483.4 272 84.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-134 483.4 322 74.2
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.7e-134 483.0 328 72.0
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.7e-134 483.0 334 71.9
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.2e-134 482.6 268 83.2
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.8e-134 481.9 326 74.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.8e-134 481.9 331 70.7
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.5e-133 479.9 331 72.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-132 476.5 315 74.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.7e-132 475.7 332 72.9
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.7e-132 475.7 324 72.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 2.7e-132 475.7 263 83.7
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 6.1e-132 474.6 316 72.5
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 6.1e-132 474.6 331 70.1
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 6.1e-132 474.6 314 75.2
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 8.0e-132 474.2 318 72.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.4e-131 473.4 324 73.5
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.8e-131 473.0 331 71.0
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.3e-131 472.6 316 73.4
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 4.0e-131 471.9 316 72.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 4.0e-131 471.9 316 72.2
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 4.0e-131 471.9 342 69.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.0e-131 471.9 300 74.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 5.2e-131 471.5 264 82.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 8.8e-131 470.7 321 73.2
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 8.8e-131 470.7 263 83.3
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-130 470.3 321 71.0
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.5e-130 469.9 315 74.9
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-130 469.9 263 84.8
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.5e-130 469.9 315 72.7
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-130 469.5 316 74.7
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-130 469.5 316 74.7
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.4e-130 468.8 317 71.9
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 3.4e-130 468.8 263 82.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 5.7e-130 468.0 324 71.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.7e-130 468.0 283 79.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 7.5e-130 467.6 318 71.4
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 9.8e-130 467.2 319 73.4
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 9.8e-130 467.2 323 73.1
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.3e-129 466.8 322 73.0
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.3e-129 466.8 316 73.4
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.3e-129 466.8 331 70.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.7e-129 466.5 317 72.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-129 466.5 316 72.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.2e-129 466.1 283 79.9
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 2.2e-129 466.1 326 70.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 4.8e-129 464.9 263 82.1
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 6.3e-129 464.5 285 77.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 8.3e-129 464.2 316 74.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 8.3e-129 464.2 263 82.9
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.4e-128 463.4 263 82.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.4e-128 462.6 271 83.8
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.4e-128 462.6 324 71.3
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.1e-128 462.2 322 71.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.1e-128 462.2 327 70.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.1e-128 461.8 327 70.6
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 7.0e-128 461.1 263 82.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.2e-127 460.3 320 71.6
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.2e-127 460.3 328 71.3
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.0e-127 459.5 324 69.1
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.7e-127 457.6 263 81.4
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 7.7e-127 457.6 281 78.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.7e-126 456.4 275 78.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.9e-126 455.7 305 73.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.9e-126 455.7 242 88.0
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 9.5e-125 450.7 285 76.8
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 3.0e-123 445.7 242 85.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.4e-120 436.0 263 78.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.4e-120 436.0 233 86.3
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 3.3e-117 425.6 316 66.8
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.6e-116 422.2 219 88.6
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.0e-115 420.6 217 86.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 5.2e-115 418.3 221 88.2
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 6.8e-115 417.9 247 81.4
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 9.8e-114 414.1 219 88.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.2e-113 412.9 270 72.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 3.7e-113 412.1 216 86.6
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.6e-111 406.8 218 83.9
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.7e-111 406.0 327 62.7
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 9.5e-109 397.5 321 64.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 8.0e-108 394.4 208 88.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.5e-106 390.2 320 64.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.7e-105 386.7 267 70.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.1e-101 374.0 236 82.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.0e-99 365.5 217 76.5
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 4.4e-98 362.1 311 60.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 6.0e-95 351.7 292 63.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 8.9e-91 337.8 330 55.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.7e-81 307.0 154 90.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.9e-81 306.2 233 62.7
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.7e-79 299.7 154 88.3
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.5e-79 299.3 215 72.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.0e-74 283.5 243 62.6
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 9.9e-74 281.2 217 65.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.3e-70 270.8 201 70.6
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-69 266.2 193 68.4
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 4.0e-67 259.2 150 80.0
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.7e-57 227.3 127 81.9
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.8e-54 217.2 147 69.4
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.7e-36 156.4 165 56.4
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.9e-16 90.9 104 56.7
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.7e-15 86.3 49 75.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.3e-14 84.0 98 53.1
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.3e-14 84.0 87 52.9
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.2e-10 71.6 94 46.8


User provided reference genes

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