Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-60 235.7 118 100.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.6e-13 79.7 92 53.3
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 8.1e-13 77.4 90 53.3
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.1e-12 77.0 90 51.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-12 76.3 90 54.4
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.8e-12 76.3 90 53.3
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.1e-12 75.5 90 53.3
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.0e-12 75.1 91 51.6
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 4.0e-12 75.1 112 43.8
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 4.0e-12 75.1 90 51.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 5.3e-12 74.7 91 50.5
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 6.9e-12 74.3 91 51.6
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 6.9e-12 74.3 90 51.1
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 6.9e-12 74.3 90 51.1
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.0e-12 73.9 77 59.7
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.2e-11 73.6 77 54.5
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.2e-11 73.6 90 50.0
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.2e-11 73.6 90 53.3
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.2e-11 73.6 93 49.5
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.5e-11 73.2 88 53.4
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.5e-11 73.2 90 53.3
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.0e-11 72.8 90 51.1
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.0e-11 72.8 88 51.1
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.6e-11 72.4 90 51.1
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.6e-11 72.4 90 48.9
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.6e-11 72.4 90 50.0
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.6e-11 72.4 90 50.0
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.6e-11 72.4 92 47.8
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.5e-11 71.6 90 48.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.5e-11 71.6 106 46.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 5.8e-11 71.2 90 51.1
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.6e-11 70.9 88 48.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 9.9e-11 70.5 88 50.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.3e-10 70.1 88 50.0
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.3e-10 70.1 88 50.0
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.3e-10 70.1 88 50.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.7e-10 69.7 88 48.9
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.7e-10 69.7 88 48.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-10 69.7 90 46.7
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 2.2e-10 69.3 88 51.1
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.2e-10 69.3 88 46.6
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 2.9e-10 68.9 88 50.0
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.8e-10 68.6 90 46.7
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 3.8e-10 68.6 88 47.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.8e-10 68.6 90 48.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.9e-10 68.2 90 46.7
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 6.4e-10 67.8 88 47.7
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 6.4e-10 67.8 88 46.6
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.4e-10 67.8 89 49.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.1e-09 67.0 90 51.1
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.1e-09 67.0 88 46.6
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-09 67.0 93 45.2
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-09 66.6 89 49.4
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-09 66.6 89 49.4
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.4e-09 66.6 91 49.5
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.4e-09 66.6 88 47.7
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.4e-09 66.6 88 50.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.4e-09 66.6 87 46.0
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.4e-09 66.6 113 42.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.9e-09 66.2 90 45.6
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.9e-09 66.2 90 45.6
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.9e-09 66.2 88 47.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.9e-09 66.2 88 47.7
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.9e-09 66.2 88 45.5
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.4e-09 65.9 88 47.7
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.4e-09 65.9 90 46.7
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 3.2e-09 65.5 94 47.9
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 3.2e-09 65.5 88 45.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-09 65.1 90 44.4
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 4.2e-09 65.1 90 44.4
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 5.5e-09 64.7 88 48.9
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 5.5e-09 64.7 88 46.6
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 5.5e-09 64.7 85 47.1
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.5e-09 64.7 88 45.5
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 7.1e-09 64.3 92 45.7
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 7.1e-09 64.3 90 44.4
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 7.1e-09 64.3 90 44.4
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 7.1e-09 64.3 90 44.4
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 7.1e-09 64.3 93 39.8
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 7.1e-09 64.3 88 46.6
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 7.1e-09 64.3 90 45.6
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 7.1e-09 64.3 88 45.5
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 7.1e-09 64.3 88 45.5
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 9.3e-09 63.9 99 37.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 9.3e-09 63.9 88 48.9
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.6e-08 63.2 92 44.6
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.6e-08 63.2 87 47.1
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.1e-08 62.8 88 46.6
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.1e-08 62.8 91 42.9
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.1e-08 62.8 88 46.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.1e-08 62.8 75 49.3
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.1e-08 62.8 84 48.8
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.1e-08 62.8 84 47.6
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.7e-08 62.4 88 44.3
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 3.5e-08 62.0 90 42.2
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.6e-08 61.6 90 42.2
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 4.6e-08 61.6 84 47.6
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 7.9e-08 60.8 85 43.5
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 7.9e-08 60.8 97 40.2
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 7.9e-08 60.8 90 42.2
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 7.9e-08 60.8 91 40.7
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.0e-07 60.5 90 41.1
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.0e-07 60.5 90 44.4
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.0e-07 60.5 90 44.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.8e-07 59.7 87 44.8
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 3.0e-07 58.9 85 40.0
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 3.9e-07 58.5 90 41.1
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 6.7e-07 57.8 90 40.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 6.7e-07 57.8 90 40.0
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-07 57.4 85 40.0
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.1e-06 57.0 80 45.0
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.5e-06 55.8 85 42.4
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.3e-06 55.5 77 40.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 7.4e-06 54.3 71 43.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.6e-06 53.9 90 40.0


User provided reference genes

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