Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.0e-161 572.4 286 100.0
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 3.5e-118 428.7 286 79.0
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 6.4e-112 407.9 283 72.8
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 9.5e-108 394.0 287 72.1
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.4e-105 385.6 284 68.7
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 5.8e-105 384.8 283 69.3
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 7.5e-105 384.4 282 70.6
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 9.8e-105 384.0 283 67.8
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.7e-104 383.3 284 68.3
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 7.1e-103 377.9 283 68.9
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 9.2e-103 377.5 245 76.7
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 7.3e-100 367.9 234 76.5
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 2.8e-99 365.9 285 65.3
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.8e-99 365.9 284 65.8
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 8.1e-99 364.4 228 76.8
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.8e-98 363.2 284 65.5
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.5e-97 360.1 286 64.3
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 7.6e-97 357.8 286 65.0
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 9.9e-97 357.5 226 75.2
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.1e-95 354.0 289 63.7
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 9.2e-95 350.9 284 64.4
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.2e-94 350.5 222 74.8
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.6e-94 350.1 224 74.1
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 4.6e-94 348.6 284 62.3
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 7.8e-94 347.8 284 64.1
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 2.3e-93 346.3 283 65.0
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 2.3e-93 346.3 219 75.3
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.3e-93 346.3 284 62.7
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.0e-93 345.9 283 62.2
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 3.0e-93 345.9 254 67.7
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.0e-93 345.9 220 75.9
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 6.6e-93 344.7 231 74.0
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 6.6e-93 344.7 231 74.0
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 8.6e-93 344.4 236 70.3
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.1e-92 344.0 284 60.6
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 1.5e-92 343.6 282 59.6
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.5e-92 343.6 284 62.7
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.9e-92 343.2 290 60.3
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.3e-92 342.4 294 60.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 9.6e-92 340.9 284 59.9
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.2e-91 340.5 283 61.5
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 4.7e-91 338.6 283 60.1
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.4e-90 336.3 283 61.8
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.4e-90 336.3 283 61.8
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 2.4e-90 336.3 282 61.0
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 2.4e-90 336.3 284 60.2
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 5.2e-90 335.1 219 71.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.2e-90 335.1 220 73.2
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 8.9e-90 334.3 294 57.8
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 8.9e-90 334.3 290 59.7
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.2e-89 334.0 283 61.5
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.2e-89 334.0 283 60.8
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 5.8e-89 331.6 233 68.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 7.6e-89 331.3 253 63.6
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.3e-88 330.5 219 72.1
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.7e-88 330.1 289 60.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 2.2e-88 329.7 284 60.6
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 4.9e-88 328.6 283 60.8
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 6.4e-88 328.2 223 70.0
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.4e-87 326.2 218 70.2
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 2.4e-87 326.2 284 58.5
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 3.2e-87 325.9 240 66.7
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.1e-87 324.7 231 67.5
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 1.2e-86 323.9 218 70.2
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.1e-86 323.2 223 70.9
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.7e-86 322.8 226 69.0
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.5e-86 322.4 229 67.7
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 4.6e-86 322.0 268 60.4
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.0e-85 320.9 223 68.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.3e-85 319.7 224 67.9
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 3.0e-85 319.3 223 70.0
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 3.0e-85 319.3 284 58.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 3.9e-85 318.9 287 57.5
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 8.7e-85 317.8 247 64.0
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.5e-84 317.0 288 57.3
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 5.6e-84 315.1 283 60.1
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 9.6e-84 314.3 292 58.6
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 2.8e-83 312.8 224 67.9
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 8.1e-83 311.2 282 56.7
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 8.1e-83 311.2 225 65.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.8e-82 310.1 255 60.4
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 5.3e-82 308.5 283 57.2
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.5e-81 307.0 244 61.1
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 2.0e-81 306.6 187 78.1
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 4.9e-80 302.0 283 55.1
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 6.4e-80 301.6 256 59.4
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 6.4e-80 301.6 256 59.4
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 2.4e-79 299.7 215 68.4
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 3.2e-79 299.3 252 59.9
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 3.2e-79 299.3 252 59.9
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 3.2e-79 299.3 252 59.9
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.7e-78 296.2 216 67.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.7e-77 293.5 217 65.0
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.0e-77 292.7 217 63.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.0e-77 292.7 318 49.4
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.9e-77 292.4 211 66.4
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 4.3e-76 288.9 252 57.1
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 2.8e-75 286.2 217 62.7
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.8e-75 286.2 217 62.7
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 8.1e-75 284.6 217 62.2
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 8.1e-75 284.6 283 54.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 9.9e-73 277.7 479 38.8
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 3.9e-69 265.8 208 57.7
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.5e-68 263.1 221 60.2
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 3.1e-66 256.1 208 56.7
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.3e-61 240.7 212 55.2
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 7.9e-54 214.9 188 61.2
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 3.0e-53 213.0 214 48.1
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.1e-50 203.0 158 58.2
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.7e-48 197.2 209 45.9
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 3.6e-46 189.5 117 75.2
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.3e-45 186.8 121 75.2
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 9.4e-39 164.9 113 68.1
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 9.4e-39 164.9 99 78.8
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.7e-38 162.5 105 70.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.4e-37 161.0 115 72.2
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.5e-36 157.5 106 68.9
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 3.3e-36 156.4 116 71.6
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.1e-31 141.4 128 54.7
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 7.2e-23 112.1 233 29.6
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 2.0e-20 104.0 83 61.4
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 5.0e-16 89.4 76 56.6
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.9e-15 87.4 67 61.2
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.2e-15 86.3 97 50.5
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 7.8e-09 65.5 77 41.6
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 5.6e-07 59.3 87 35.6


User provided reference genes

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