Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1783 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.7e-61 238.4 117 100.0
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.7e-23 112.8 58 86.2
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.8e-21 105.5 115 55.7
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.8e-21 105.5 115 55.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.1e-20 102.1 110 54.5
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 5.4e-17 91.3 59 71.2
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.3e-15 85.9 61 65.6
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.9e-15 85.1 51 70.6
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 6.6e-15 84.3 67 61.2
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.9e-14 82.8 67 59.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 2.5e-14 82.4 51 70.6
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 3.3e-14 82.0 50 68.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 9.5e-14 80.5 49 71.4
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.2e-13 80.1 58 62.1
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-13 80.1 58 62.1
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.2e-13 80.1 58 62.1
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 3.6e-13 78.6 41 85.4
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.7e-13 78.2 58 58.6
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 8.1e-13 77.4 45 71.1
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 8.1e-13 77.4 45 71.1
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.1e-12 77.0 46 69.6
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.1e-12 77.0 45 68.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.4e-12 76.6 54 61.1
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.4e-12 76.6 50 66.0
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 1.8e-12 76.3 62 51.6
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 1.8e-12 76.3 56 57.1
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 4.0e-12 75.1 50 62.0
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 5.2e-12 74.7 61 59.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 6.8e-12 74.3 62 50.0
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 6.8e-12 74.3 51 60.8
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 6.8e-12 74.3 50 62.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 6.8e-12 74.3 77 49.4
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 8.9e-12 73.9 51 62.7
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 8.9e-12 73.9 51 62.7
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 8.9e-12 73.9 51 62.7
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 1.2e-11 73.6 81 45.7
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.0e-11 72.8 50 62.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.0e-11 72.8 51 62.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.0e-11 72.8 51 62.7
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 2.0e-11 72.8 50 62.0
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 2.0e-11 72.8 50 62.0
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 2.0e-11 72.8 51 62.7
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 2.0e-11 72.8 51 60.8
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.6e-11 72.4 51 60.8
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 3.4e-11 72.0 46 67.4
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.4e-11 72.0 54 57.4
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.4e-11 71.6 51 60.8
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.4e-11 71.6 81 46.9
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 4.4e-11 71.6 82 43.9
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 5.8e-11 71.2 50 60.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 7.5e-11 70.9 82 43.9
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 9.9e-11 70.5 61 55.7
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 9.9e-11 70.5 54 55.6
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.7e-10 69.7 54 59.3
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.7e-10 69.7 54 59.3
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.2e-10 69.3 51 62.7
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.9e-10 68.9 51 52.9
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.9e-10 68.9 46 65.2
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.7e-10 68.6 50 60.0
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 3.7e-10 68.6 41 70.7
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 3.7e-10 68.6 41 70.7
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 4.9e-10 68.2 51 60.8
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 8.3e-10 67.4 41 70.7
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.1e-09 67.0 47 63.8
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.1e-09 67.0 41 68.3
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.9e-09 66.2 50 58.0
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.9e-09 66.2 51 54.9
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.9e-09 66.2 45 62.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 2.4e-09 65.9 55 49.1
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.4e-09 65.9 41 68.3
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 2.4e-09 65.9 45 64.4
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.4e-09 65.9 51 51.0
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 3.2e-09 65.5 50 54.0
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 4.1e-09 65.1 51 54.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 4.1e-09 65.1 50 52.0
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.4e-09 64.7 62 50.0
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.4e-09 64.7 62 50.0
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 5.4e-09 64.7 39 66.7
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 7.1e-09 64.3 45 60.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 9.2e-09 63.9 50 50.0
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 9.2e-09 63.9 52 50.0
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 9.2e-09 63.9 45 60.0
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.2e-08 63.5 41 68.3
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.6e-08 63.2 50 50.0
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 1.6e-08 63.2 45 64.4
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.6e-08 63.2 42 59.5
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.1e-08 62.8 103 39.8
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 2.7e-08 62.4 45 60.0
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 3.5e-08 62.0 39 66.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 4.6e-08 61.6 51 49.0
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 4.6e-08 61.6 39 66.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 4.6e-08 61.6 61 49.2
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-07 60.5 41 65.9
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-07 60.5 41 65.9
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 1.3e-07 60.1 50 52.0
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.3e-07 60.1 40 57.5
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 1.7e-07 59.7 51 54.9
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.7e-07 59.7 43 53.5
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 2.3e-07 59.3 51 54.9
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 3.9e-07 58.5 75 41.3
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 3.9e-07 58.5 55 49.1
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 5.1e-07 58.2 41 53.7
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.6e-07 57.8 45 57.8
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 8.6e-07 57.4 59 52.5
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 4.3e-06 55.1 42 54.8
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 7.3e-06 54.3 51 49.0
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 7.3e-06 54.3 51 49.0
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 9.5e-06 53.9 41 58.5


User provided reference genes

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