Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-51 205.7 99 100.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.0e-24 114.4 62 83.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.0e-21 104.8 62 79.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.2e-17 93.2 64 75.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.7e-17 92.0 67 65.7
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.5e-17 91.7 61 65.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 3.5e-17 91.7 63 66.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-16 89.7 62 64.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-16 89.7 62 64.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-16 89.7 62 62.9
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.3e-16 89.0 63 71.4
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.3e-16 89.0 64 62.5
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.0e-16 88.6 68 67.6
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 3.0e-16 88.6 68 67.6
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.0e-16 88.6 62 64.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.9e-16 88.2 58 65.5
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.6e-16 87.0 64 71.9
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-15 85.9 64 65.6
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-15 85.9 62 61.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.5e-15 85.5 58 72.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 3.3e-15 85.1 60 65.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 4.3e-15 84.7 62 61.3
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.6e-15 84.3 63 61.9
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.6e-15 84.3 62 59.7
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.5e-15 83.6 46 82.6
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-14 83.2 63 60.3
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.6e-14 82.8 62 62.9
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.8e-14 82.0 63 63.5
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.8e-14 82.0 63 63.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.1e-14 80.5 63 61.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 8.1e-14 80.5 75 53.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.4e-13 79.7 62 62.9
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-13 79.7 66 54.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-13 79.3 65 69.2
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.8e-13 79.3 62 56.5
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.8e-13 79.3 62 61.3
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.3e-13 79.0 85 49.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.1e-13 78.6 67 56.7
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.1e-13 78.6 62 56.5
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.1e-13 78.6 66 66.7
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 4.0e-13 78.2 67 56.7
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 6.8e-13 77.4 62 61.3
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 6.8e-13 77.4 65 61.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 6.8e-13 77.4 43 81.4
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.5e-12 76.3 62 58.1
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-12 75.9 55 58.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-12 75.9 55 67.3
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.6e-12 75.5 50 72.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.6e-12 75.5 50 72.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-12 75.5 62 53.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.6e-12 75.5 59 66.1
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.4e-12 75.1 61 60.7
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.4e-12 75.1 63 60.3
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.4e-12 75.1 69 53.6
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-12 74.7 62 53.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.4e-12 74.7 61 54.1
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 7.5e-12 73.9 62 58.1
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 9.9e-12 73.6 63 60.3
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.3e-11 73.2 69 58.0
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.3e-11 73.2 64 62.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.2e-11 72.4 65 56.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.2e-11 72.4 60 58.3
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-11 72.4 69 52.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.2e-11 72.4 63 55.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.2e-11 72.4 61 55.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.2e-11 72.4 55 61.8
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-11 72.0 63 55.6
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.9e-11 72.0 63 54.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.9e-11 72.0 68 51.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 3.7e-11 71.6 63 58.7
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.7e-11 71.6 58 56.9
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 3.7e-11 71.6 62 59.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.9e-11 71.2 62 56.5
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.9e-11 71.2 56 53.6
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 6.4e-11 70.9 66 51.5
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 6.4e-11 70.9 66 51.5
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.4e-11 70.9 41 70.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.4e-11 70.9 61 57.4
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.4e-11 70.9 64 50.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 6.4e-11 70.9 63 55.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 8.3e-11 70.5 71 46.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-10 70.1 61 55.7
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.1e-10 70.1 61 52.5
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.4e-10 69.7 63 54.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.4e-10 69.7 62 51.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.4e-10 69.7 61 54.1
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-10 69.3 64 54.7
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-10 69.3 36 80.6
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.9e-10 69.3 40 72.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.9e-10 69.3 64 56.2
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.4e-10 68.9 40 72.5
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.4e-10 68.9 36 77.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 3.2e-10 68.6 42 71.4
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 3.2e-10 68.6 62 54.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.2e-10 68.6 48 62.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 4.1e-10 68.2 41 65.9
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.1e-10 68.2 64 54.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.1e-10 68.2 56 58.9
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 4.1e-10 68.2 48 66.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 4.1e-10 68.2 51 58.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 5.4e-10 67.8 65 55.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.4e-10 67.8 62 51.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.4e-10 67.8 62 51.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 5.4e-10 67.8 48 66.7
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 5.4e-10 67.8 56 55.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 7.1e-10 67.4 48 60.4
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.1e-10 67.4 43 72.1
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 9.2e-10 67.0 41 70.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.2e-10 67.0 41 70.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.2e-10 67.0 41 70.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.2e-10 67.0 41 70.7
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.2e-10 67.0 62 51.6
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 9.2e-10 67.0 47 59.6
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-09 66.6 36 77.8
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-09 66.6 40 67.5
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-09 66.2 65 50.8
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.6e-09 66.2 48 62.5
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-09 65.9 40 70.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.1e-09 65.9 62 51.6
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.1e-09 65.9 56 57.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.1e-09 65.9 60 53.3
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.7e-09 65.5 34 76.5
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-09 65.5 41 70.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.7e-09 65.5 47 55.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.7e-09 65.5 59 49.2
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.7e-09 65.5 48 70.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.5e-09 65.1 49 67.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.5e-09 65.1 36 77.8
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.5e-09 65.1 40 70.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.6e-09 64.7 61 54.1
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.6e-09 64.7 38 71.1
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 4.6e-09 64.7 64 51.6
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 6.0e-09 64.3 65 56.9
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 6.0e-09 64.3 56 55.4
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.0e-09 64.3 62 51.6
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 7.8e-09 63.9 62 56.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 7.8e-09 63.9 45 62.2
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 37 75.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 64 53.1
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.7e-08 62.8 45 64.4
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.9e-08 61.6 41 65.9
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 5.1e-08 61.2 63 54.0
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 6.6e-08 60.8 38 71.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 6.6e-08 60.8 38 71.1
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 6.6e-08 60.8 38 71.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 6.6e-08 60.8 66 50.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 6.6e-08 60.8 38 71.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.6e-08 60.8 48 62.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 6.6e-08 60.8 62 48.4
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 6.6e-08 60.8 47 59.6
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 8.6e-08 60.5 46 65.2
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 8.6e-08 60.5 64 50.0
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 8.6e-08 60.5 62 50.0
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 57 50.9
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 46 65.2
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.1e-07 60.1 44 65.9
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 47 59.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-07 59.7 42 64.3
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.5e-07 59.7 44 63.6
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.9e-07 59.3 37 73.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.9e-07 59.3 62 48.4
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.5e-07 58.9 44 63.6
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.5e-07 58.9 58 53.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 3.3e-07 58.5 46 58.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.3e-07 58.2 65 50.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.3e-07 58.2 65 50.8
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.6e-07 57.8 47 59.6
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.6e-07 57.8 62 46.8
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.3e-07 57.4 46 60.9
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 63 47.6
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 63.6
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 34 73.5
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-06 56.2 62 45.2
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 2.1e-06 55.8 62 48.4
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.6e-06 55.1 62 48.4
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 4.7e-06 54.7 46 54.3
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 4.7e-06 54.7 32 78.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.1e-06 53.9 60 51.7


User provided reference genes

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