Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.4e-240 835.9 432 100.0
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.0e-137 494.2 434 65.4
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.4e-123 446.4 375 67.2
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 3.2e-123 446.0 309 75.4
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 2.7e-122 443.0 368 66.6
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 4.3e-120 435.6 367 66.5
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 7.3e-120 434.9 435 59.5
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.2e-119 431.8 403 61.5
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-118 431.0 348 66.1
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.4e-118 430.6 438 58.4
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.6e-117 426.4 443 56.7
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 7.6e-117 424.9 327 70.9
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.3e-116 424.1 310 71.3
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 5.4e-115 418.7 325 71.1
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 7.1e-115 418.3 326 69.3
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.2e-114 417.5 364 64.8
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.6e-114 417.2 299 74.2
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.3e-113 413.3 257 82.9
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.9e-113 412.5 333 65.8
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.9e-112 410.2 349 66.8
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.9e-112 410.2 255 81.2
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.5e-112 409.8 359 61.3
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 3.3e-112 409.5 373 60.6
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 9.6e-112 407.9 332 65.4
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.3e-111 407.5 387 58.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.1e-111 406.8 285 74.7
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 3.7e-111 406.0 306 71.6
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 6.2e-111 405.2 352 60.8
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.1e-110 404.4 282 74.1
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.8e-110 403.7 408 56.1
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.4e-110 403.3 410 54.1
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.1e-110 402.9 299 67.9
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 3.1e-110 402.9 366 63.1
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-110 402.5 298 69.1
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.0e-110 402.5 298 69.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.3e-110 402.1 388 58.5
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 5.3e-110 402.1 299 72.6
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.2e-109 401.0 376 58.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.0e-109 400.2 259 77.6
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.4e-109 399.4 428 54.7
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.5e-109 399.1 364 60.2
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-109 398.7 323 64.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.8e-109 398.7 302 67.2
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 5.8e-109 398.7 281 71.5
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.8e-109 398.7 350 61.7
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.0e-108 397.9 288 71.9
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.3e-108 397.5 257 80.5
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.7e-108 397.1 339 64.6
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 3.8e-108 396.0 284 71.5
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 3.8e-108 396.0 312 68.9
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 1.4e-107 394.0 252 78.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 4.2e-107 392.5 364 58.8
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 4.2e-107 392.5 268 75.7
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 9.3e-107 391.3 360 60.6
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 9.3e-107 391.3 279 73.5
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.2e-106 391.0 260 75.8
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.2e-106 391.0 382 57.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.2e-106 391.0 337 63.8
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.1e-106 390.2 261 77.0
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.7e-106 389.8 251 77.7
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.0e-105 387.9 392 57.1
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.3e-105 386.7 414 54.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 5.1e-105 385.6 267 73.0
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.1e-105 385.6 267 74.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 6.7e-105 385.2 259 75.7
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.1e-104 384.4 312 66.3
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.5e-104 384.0 265 75.1
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.5e-104 384.0 298 68.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.5e-104 384.0 298 68.5
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.5e-104 384.0 257 73.5
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.9e-104 383.6 311 65.6
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.9e-104 383.6 356 59.8
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.5e-104 383.3 285 71.2
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.3e-104 382.5 260 73.5
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 5.7e-104 382.1 355 58.9
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 7.4e-104 381.7 275 71.3
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 7.4e-104 381.7 355 58.9
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 9.6e-104 381.3 349 59.9
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.3e-103 380.9 251 77.3
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-103 380.9 288 67.7
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.8e-103 379.8 323 62.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.8e-103 379.8 323 62.2
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.8e-103 379.8 411 55.0
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 6.2e-103 378.6 253 75.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 6.2e-103 378.6 253 75.5
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.2e-103 378.6 251 76.1
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 6.2e-103 378.6 285 70.9
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 6.2e-103 378.6 253 76.7
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.4e-102 377.5 286 67.5
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.8e-102 377.1 291 69.8
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 1.8e-102 377.1 291 69.8
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 6.9e-102 375.2 286 67.1
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 6.9e-102 375.2 261 73.6
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 6.9e-102 375.2 261 73.6
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 6.9e-102 375.2 253 75.1
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 6.9e-102 375.2 253 75.1
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 6.9e-102 375.2 331 62.2
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 9.0e-102 374.8 251 76.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.6e-101 373.2 260 70.8
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 3.4e-101 372.9 318 65.1
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.2e-100 370.2 236 78.0
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-97 360.1 286 67.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 3.9e-97 359.4 273 67.8
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.1e-94 351.3 282 63.8
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.1e-94 351.3 256 69.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 4.1e-94 349.4 221 76.5
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 5.9e-93 345.5 219 77.2
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 2.9e-92 343.2 200 84.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 6.1e-90 335.5 270 65.9
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 3.0e-89 333.2 235 67.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.4e-88 328.6 249 65.5
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.3e-87 327.8 243 72.4
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 5.9e-85 318.9 302 57.0
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.4e-83 314.3 179 87.2
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.5e-83 313.5 178 87.6
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.8e-81 305.1 181 83.4
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-80 303.9 245 62.4
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.6e-80 303.5 246 62.2
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 8.2e-79 298.5 327 52.3
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.7e-76 290.8 195 74.4
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.2e-76 290.4 181 81.2
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 5.0e-76 289.3 223 65.5
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-68 264.2 247 60.7
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.5e-67 261.2 164 82.3
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.5e-64 248.8 154 77.9
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 6.3e-63 245.7 436 42.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 4.1e-62 243.0 153 78.4
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.4e-57 228.0 154 73.4
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.3e-55 221.5 370 42.7
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.8e-55 220.3 226 48.7
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 8.3e-55 218.8 226 48.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-52 211.5 132 81.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-52 211.1 132 81.8
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.6e-52 209.1 132 81.1
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.6e-52 209.1 132 81.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-51 208.4 132 81.1
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-51 208.4 132 81.1
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.4e-49 201.4 289 45.0
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.8e-49 201.1 252 48.0
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 5.4e-46 189.5 242 48.8
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 4.3e-43 179.9 132 70.5
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.1e-42 177.6 132 69.7
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 8.0e-42 175.6 234 43.6
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-41 174.1 132 68.9
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.9e-41 172.2 163 60.7
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.6e-40 170.6 272 37.1
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 5.8e-40 169.5 104 86.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-40 169.5 104 86.5
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 3.7e-39 166.8 102 77.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 3.7e-39 166.8 102 77.5
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 8.3e-39 165.6 104 84.6
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 9.2e-38 162.2 260 41.9
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.3e-36 157.5 258 39.9
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 5.0e-36 156.4 91 84.6
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 6.2e-34 149.4 143 63.6
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 5.4e-30 136.3 110 63.6
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.2e-26 125.2 87 69.0
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.6e-26 124.8 164 49.4
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.4e-25 121.7 86 69.8
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.7e-23 113.6 89 59.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.4e-22 110.9 63 82.5
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.3e-20 105.1 63 82.5
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 3.9e-20 103.6 78 70.5
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 8.6e-20 102.4 84 60.7
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.4e-17 94.4 269 27.9
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.4e-14 84.3 44 93.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-12 78.2 71 59.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 3.0e-12 77.4 52 75.0


User provided reference genes

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