Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1730 Trochodendron aralioides HOM05D007349 ORTHO05D009317 2.4e-43 178.3 83 100.0
TAR103G0001 Trochodendron aralioides HOM05D007349 ORTHO05D009317 2.2e-17 92.0 41 95.1
Nitab4.5_0008389g0020 Nicotiana tabacum HOM05D007349 ORTHO05D009317 5.5e-16 87.4 55 70.9
Dinv29581 Davidia involucrata HOM05D007349 ORTHO05D009317 7.2e-16 87.0 61 63.9
Peaxi162Scf00938g00312 Petunia axillaris HOM05D007349 ORTHO05D009317 9.4e-16 86.7 41 85.4
Hma1.2p1_2958F.1_g330790 Hydrangea macrophylla HOM05D007349 ORTHO05D009317 1.6e-15 85.9 41 85.4
MBI07_g23672_MAGBIO Magnolia biondii HOM05D007349 ORTHO05D009317 1.6e-15 85.9 41 85.4
DCAR_024489 Daucus carota HOM05D007349 ORTHO05D009317 3.6e-15 84.7 41 85.4
Solyc12g098220.2 Solanum lycopersicum HOM05D007349 ORTHO05D009317 3.6e-15 84.7 41 85.4
Sopen12g033040 Solanum pennellii HOM05D007349 ORTHO05D009317 3.6e-15 84.7 41 85.4
PGSC0003DMG400016859 Solanum tuberosum HOM05D007349 ORTHO05D009317 3.6e-15 84.7 41 82.9
Dinv29576 Davidia involucrata HOM05D007349 ORTHO05D009317 6.1e-15 84.0 41 82.9
PSO210G4925 Papaver somniferum HOM05D007349 ORTHO05D009317 8.0e-15 83.6 41 80.5
GSVIVG01029086001 Vitis vinifera HOM05D007349 ORTHO05D009317 8.0e-15 83.6 41 80.5
Oeu026866.1 Olea europaea HOM05D007349 ORTHO05D009317 1.8e-14 82.4 41 82.9
Rhsim09G0053700 Rhododendron simsii HOM05D007349 ORTHO05D009317 2.3e-14 82.0 41 82.9
ClCG05G003470 Citrullus lanatus HOM05D007349 ORTHO05D009317 3.0e-14 81.6 41 82.9
FAN12G2695 Fragaria x ananassa HOM05D007349 ORTHO05D009317 4.0e-14 81.3 68 54.4
CSS0029747 Camellia sinensis var. sinensis HOM05D007349 ORTHO05D009317 5.2e-14 80.9 61 59.0
CiPaw.01G123800 Carya illinoinensis HOM05D007349 ORTHO05D009317 5.2e-14 80.9 41 80.5
Nn3g19440 Nelumbo nucifera HOM05D007349 ORTHO05D009317 8.8e-14 80.1 41 82.9
Cfa011815 Carpinus fangiana HOM05D007349 ORTHO05D009317 1.5e-13 79.3 41 78.0
Haze_11590 Corylus avellana HOM05D007349 ORTHO05D009317 1.5e-13 79.3 41 78.0
Aqoxy5G00063 Aquilegia oxysepala HOM05D007349 ORTHO05D009317 2.0e-13 79.0 42 76.2
QL06p023778 Quercus lobata HOM05D007349 ORTHO05D009317 2.6e-13 78.6 40 77.5
ATR0329G016 Amborella trichopoda HOM05D007349 ORTHO05D009317 3.4e-13 78.2 41 78.0
Sabra03G0130400 Salix brachista HOM05D007349 ORTHO05D009317 3.4e-13 78.2 41 75.6
Potri.003G177900 Populus trichocarpa HOM05D007349 ORTHO05D009317 4.4e-13 77.8 41 75.6
FAN22G0302 Fragaria x ananassa HOM05D007349 ORTHO05D009317 5.7e-13 77.4 73 49.3
RcHm_v2.0_Chr4g0385541 Rosa chinensis HOM05D007349 ORTHO05D009317 7.5e-13 77.0 41 73.2
RcHm_v2.0_Chr6g0244431 Rosa chinensis HOM05D007349 ORTHO05D009317 7.5e-13 77.0 41 73.2
vmacro00487 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 7.5e-13 77.0 81 49.4
FvH4_4g00420 Fragaria vesca HOM05D007349 ORTHO05D009317 9.8e-13 76.6 68 52.9
CsaV3_3G011130 Cucumis sativus L. HOM05D007349 ORTHO05D009317 1.3e-12 76.3 41 78.0
Prupe.1G004200 Prunus persica HOM05D007349 ORTHO05D009317 1.3e-12 76.3 41 70.7
Cc03_g07560 Coffea canephora HOM05D007349 ORTHO05D009317 1.7e-12 75.9 41 75.6
MELO3C006324.2 Cucumis melo HOM05D007349 ORTHO05D009317 2.2e-12 75.5 56 60.7
MD04G1004500 Malus domestica HOM05D007349 ORTHO05D009317 3.7e-12 74.7 41 70.7
TWI09G1137 Tripterygium wilfordii HOM05D007349 ORTHO05D009317 3.7e-12 74.7 41 75.6
Gohir.A09G052212 Gossypium hirsutum HOM05D007349 ORTHO05D009317 1.8e-11 72.4 42 73.8
Gorai.006G056500 Gossypium raimondii HOM05D007349 ORTHO05D009317 1.8e-11 72.4 42 73.8
SalBow3G0646 Salvia bowleyana HOM05D007349 ORTHO05D009317 1.8e-11 72.4 41 68.3
MSTRG.21955 Avicennia marina HOM05D007349 ORTHO05D009317 2.4e-11 72.0 41 68.3
Lsat_1_v5_gn_6_59420 Lactuca sativa HOM05D007349 ORTHO05D009317 3.1e-11 71.6 41 70.7
ECA248G1485 Erigeron canadensis HOM05D007349 ORTHO05D009317 4.1e-11 71.2 41 68.3
Gohir.D09G052924 Gossypium hirsutum HOM05D007349 ORTHO05D009317 5.4e-11 70.9 42 73.8
Duzib212G0593 Durio zibethinus HOM05D007349 ORTHO05D009317 7.0e-11 70.5 42 71.4
Migut.N00367 Erythranthe guttata HOM05D007349 ORTHO05D009317 7.0e-11 70.5 41 68.3
HanXRQChr07g0185641 Helianthus annuus HOM05D007349 ORTHO05D009317 7.0e-11 70.5 41 65.9
Thecc.04G207000 Theobroma cacao HOM05D007349 ORTHO05D009317 7.0e-11 70.5 42 69.0
Sed0005273 Sechium edule HOM05D007349 ORTHO05D009317 9.1e-11 70.1 41 70.7
AL7G42820 Arabidopsis lyrata HOM05D007349 ORTHO05D009317 1.2e-10 69.7 42 71.4
Carub.0007s2878 Capsella rubella HOM05D007349 ORTHO05D009317 1.2e-10 69.7 42 71.4
CARHR219460 Cardamine hirsuta HOM05D007349 ORTHO05D009317 1.2e-10 69.7 42 71.4
THA.LOC104808722 Tarenaya hassleriana HOM05D007349 ORTHO05D009317 1.2e-10 69.7 42 71.4
AT4G13690 Arabidopsis thaliana HOM05D007349 ORTHO05D009317 1.6e-10 69.3 42 71.4
CANSAT78G2317 Cannabis sativa HOM05D007349 ORTHO05D009317 2.0e-10 68.9 42 71.4
Lalb_Chr21g0312631 Lupinus albus HOM05D007349 ORTHO05D009317 2.0e-10 68.9 60 53.3
Ciclev10005791m.g Citrus clementina HOM05D007349 ORTHO05D009317 3.5e-10 68.2 41 68.3
VMungo0720G2898 Vigna mungo HOM05D007349 ORTHO05D009317 3.5e-10 68.2 42 69.0
Ca_10404_v3 Cicer arietinum L. HOM05D007349 ORTHO05D009317 7.7e-10 67.0 42 69.0
Manes.03G149400 Manihot esculenta HOM05D007349 ORTHO05D009317 7.7e-10 67.0 37 67.6
Phvul.007G134400 Phaseolus vulgaris HOM05D007349 ORTHO05D009317 7.7e-10 67.0 42 66.7
arahy.Tifrunner.gnm1.ann1.FV8RA9 Arachis hypogaea HOM05D007349 ORTHO05D009317 1.7e-09 65.9 42 66.7
arahy.Tifrunner.gnm1.ann1.X6WBXQ Arachis hypogaea HOM05D007349 ORTHO05D009317 1.7e-09 65.9 42 66.7
BcaB03g16060 Brassica carinata HOM05D007349 ORTHO05D009317 1.7e-09 65.9 42 69.0
Thhalv10026053m.g Eutrema salsugineum HOM05D007349 ORTHO05D009317 1.7e-09 65.9 42 69.0
SGA_v2.0_scaffold31G12592 Striga asiatica HOM05D007349 ORTHO05D009317 1.7e-09 65.9 42 64.3
Ah.13g075780 Amaranthus hybridus HOM05D007349 ORTHO05D009317 2.2e-09 65.5 41 61.0
EL10Ac3g06899 Beta vulgaris HOM05D007349 ORTHO05D009317 2.9e-09 65.1 40 65.0
Medtr1g090010 Medicago truncatula HOM05D007349 ORTHO05D009317 2.9e-09 65.1 42 64.3
Hund19205 Selenicereus undatus HOM05D007349 ORTHO05D009317 2.9e-09 65.1 41 58.5
Aa31LG9G3970 Aethionema arabicum HOM05D007349 ORTHO05D009317 3.8e-09 64.7 42 69.0
PGR142G2055 Punica granatum HOM05D007349 ORTHO05D009317 5.0e-09 64.3 41 61.0
Eucgr.H02845 Eucalyptus grandis HOM05D007349 ORTHO05D009317 6.5e-09 63.9 41 63.4
Psat0s3951g0040 Pisum sativum HOM05D007349 ORTHO05D009317 6.5e-09 63.9 42 64.3
TPR.G13407 Trifolium pratense HOM05D007349 ORTHO05D009317 8.5e-09 63.5 42 64.3
Cpa.g.sc59.118 Carica papaya HOM05D007349 ORTHO05D009317 1.1e-08 63.2 42 64.3
Glyma.20G197951 Glycine max HOM05D007349 ORTHO05D009317 1.5e-08 62.8 43 67.4
Lj5g0019311 Lotus japonicus HOM05D007349 ORTHO05D009317 1.5e-08 62.8 42 64.3
SHI01057 Sapria himalayana HOM05D007349 ORTHO05D009317 1.5e-08 62.8 36 66.7
Sp7g11450 Schrenkiella parvula HOM05D007349 ORTHO05D009317 2.5e-08 62.0 42 66.7
A04p08500 Brassica napus HOM05D007349 ORTHO05D009317 4.2e-08 61.2 42 66.7
BraA04t16541Z Brassica rapa HOM05D007349 ORTHO05D009317 4.2e-08 61.2 42 66.7
BcaC02g09398 Brassica carinata HOM05D007349 ORTHO05D009317 5.5e-08 60.8 42 66.7
C04p42240 Brassica napus HOM05D007349 ORTHO05D009317 5.5e-08 60.8 42 66.7
BolC4t25802H Brassica oleracea HOM05D007349 ORTHO05D009317 5.5e-08 60.8 42 66.7
Zm00001eb046010 Zea mays HOM05D007349 ORTHO05D009317 9.4e-08 60.1 42 59.5
Glyma.10G192600 Glycine max HOM05D007349 ORTHO05D009317 2.1e-07 58.9 42 64.3
unitig_8.g4490 Utricularia gibba HOM05D007349 ORTHO05D009317 2.7e-07 58.5 41 51.2
Nitab4.5_0000676g0280 Nicotiana tabacum HOM05D007349 ORTHO05D009317 6.8e-06 53.9 29 75.9


User provided reference genes

Program Settings