Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 4100.8 2062 100.0
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2977.6 2069 74.1
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2694.1 2026 69.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2685.6 2070 68.1
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2655.9 2071 67.9
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2640.1 2072 66.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2637.1 2069 66.8
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2612.0 2064 66.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2573.9 2067 65.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2570.8 2085 65.4
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2557.7 2042 66.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2554.2 2076 65.4
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2534.6 2088 64.5
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2504.9 2077 64.2
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2486.8 2070 63.4
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2476.4 2063 63.9
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2467.6 2064 63.6
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2466.0 1964 65.5
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2462.6 2067 63.3
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2452.9 2075 63.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2452.9 1990 64.8
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2446.8 2090 62.5
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2410.9 2084 61.5
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2403.2 2076 61.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2399.4 2150 60.9
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2390.5 2076 61.2
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2345.9 2056 61.2
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2340.8 2078 59.7
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2338.5 2078 59.7
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2333.1 2075 59.9
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2323.5 2070 59.8
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2323.1 2065 60.5
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2316.2 2068 60.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2304.2 2023 60.1
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2302.7 2105 58.9
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2293.1 2071 58.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2289.6 1974 61.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2279.6 2067 59.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2276.5 2072 59.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2264.2 2072 58.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2256.5 2065 58.7
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2250.3 2026 59.4
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2248.4 2068 58.4
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2241.1 2072 58.0
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2214.5 2072 57.7
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2199.9 2089 57.1
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2196.8 2081 57.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2189.5 2031 57.2
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2182.1 2025 59.2
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2166.0 2202 55.0
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2163.7 1944 59.7
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2154.4 2106 55.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2145.5 2016 58.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2139.8 2087 56.3
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2128.2 2014 57.6
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2104.3 2040 57.1
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2103.9 2066 56.2
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2094.7 2040 56.3
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 2090.8 2150 54.3
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2088.9 2072 55.3
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2073.1 2218 52.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2072.7 2045 55.3
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2070.8 2071 55.6
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2041.5 1955 57.0
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2032.3 2096 54.5
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2031.5 1977 55.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2030.0 2018 56.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2025.4 2022 54.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2025.0 2022 54.9
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2024.6 1975 55.6
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2016.5 1981 55.8
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2010.7 2077 53.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2009.6 1993 55.2
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2006.5 1992 55.3
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2005.7 2077 53.6
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 2001 55.9
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2004.2 1995 55.6
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2003.4 2022 54.4
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1986.5 2024 54.8
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1978.8 2026 54.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1974.9 1971 54.7
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1969.1 1977 54.6
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1713.0 1623 57.0
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1706.4 1828 52.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1686.4 1643 56.1
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1621.3 1410 62.5
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1503.0 2015 44.6
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1469.1 1166 65.2
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1334.7 2175 40.2
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1276.5 2192 37.8
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1222.2 2011 39.0
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1133.2 2112 36.4
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.7e-310 1070.5 797 68.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.3e-254 884.8 803 60.1
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.1e-248 865.1 1464 38.5
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 5.2e-248 862.8 793 59.0
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.2e-244 851.7 2103 31.3
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.9e-238 829.7 679 63.8
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 8.3e-238 828.9 1157 42.8
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.3e-206 725.3 496 79.6
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 2.3e-203 714.5 739 54.8
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.0e-187 662.5 720 52.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 7.4e-178 629.8 875 45.0
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.3e-141 506.9 268 93.3
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 8.6e-134 483.4 418 58.1
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 4.3e-125 454.5 359 61.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.2e-73 282.7 358 45.8
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.0e-69 269.6 217 62.2
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 3.7e-68 265.4 226 61.1
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 7.0e-59 234.6 314 48.1
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.0e-57 230.7 277 44.4
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.7e-55 221.9 124 86.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.7e-44 185.7 299 41.5
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 8.3e-44 184.5 227 45.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 9.4e-40 171.0 127 68.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 8.3e-36 157.9 151 53.6
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 9.5e-32 144.4 80 90.0
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 4.7e-23 115.5 118 56.8
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.2e-20 106.7 494 23.9
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 2.7e-18 99.8 119 49.6
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.3e-17 96.7 74 70.3
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.1e-16 94.4 68 63.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.5e-16 94.0 61 72.1
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 4.0e-14 85.9 69 65.2
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 5.4e-11 75.5 119 37.0
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 6.6e-09 68.6 108 42.6
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.1e-08 67.8 81 46.9
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 4.3e-08 65.9 67 44.8
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 5.6e-08 65.5 92 41.3
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 2.1e-07 63.5 71 50.7
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 8.1e-07 61.6 83 38.6


User provided reference genes

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