Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.0e-85 320.1 169 100.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.2e-47 191.8 119 79.0
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.2e-43 179.5 127 70.9
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 7.5e-36 154.5 127 68.5
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.6e-33 146.7 139 59.7
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.0e-32 144.1 119 70.6
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.0e-32 144.1 119 71.4
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.9e-31 139.8 135 61.5
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.3e-31 139.0 116 62.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.8e-30 136.0 123 70.7
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 6.1e-30 134.8 123 65.9
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.0e-29 134.0 115 60.0
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.0e-29 134.0 116 63.8
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.4e-29 133.7 128 55.5
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.8e-29 133.3 120 58.3
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 1.8e-29 133.3 124 60.5
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.3e-29 132.9 137 56.9
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 6.8e-29 131.3 127 58.3
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 6.8e-29 131.3 111 62.2
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 8.9e-29 131.0 123 68.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.9e-29 131.0 115 72.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.2e-28 130.6 116 71.6
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-28 130.2 115 72.2
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.0e-28 129.8 120 57.5
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 2.0e-28 129.8 124 58.1
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.6e-28 129.4 121 59.5
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 3.4e-28 129.0 120 67.5
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 3.4e-28 129.0 119 63.0
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.4e-28 128.6 113 59.3
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 4.4e-28 128.6 140 52.1
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 5.8e-28 128.3 124 64.5
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 7.5e-28 127.9 120 56.7
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 7.5e-28 127.9 117 70.9
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 9.8e-28 127.5 164 46.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.7e-27 126.7 119 56.3
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.7e-27 126.7 164 46.3
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.2e-27 126.3 117 59.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 2.2e-27 126.3 122 66.4
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 2.9e-27 125.9 121 66.9
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.9e-27 125.9 134 53.7
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.9e-27 125.9 121 58.7
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.1e-26 124.0 125 55.2
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.1e-26 124.0 127 61.4
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.1e-26 124.0 127 63.0
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 1.4e-26 123.6 119 54.6
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.4e-26 123.6 119 54.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.4e-26 123.6 119 54.6
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.9e-26 123.2 121 62.8
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 3.2e-26 122.5 122 54.9
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 3.2e-26 122.5 122 54.9
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 3.2e-26 122.5 119 62.2
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 3.2e-26 122.5 121 56.2
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 4.1e-26 122.1 120 55.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 5.4e-26 121.7 119 56.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 5.4e-26 121.7 138 52.9
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 7.0e-26 121.3 118 56.8
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 9.2e-26 120.9 112 57.1
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 9.2e-26 120.9 112 57.1
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 9.2e-26 120.9 119 55.5
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 9.2e-26 120.9 112 57.1
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 9.2e-26 120.9 122 51.6
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 9.2e-26 120.9 119 56.3
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.2e-25 120.6 119 59.7
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.2e-25 120.6 119 55.5
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.0e-25 119.8 111 57.7
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.0e-25 119.8 122 54.9
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.0e-25 119.8 122 54.1
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.7e-25 119.4 139 49.6
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.7e-25 119.4 128 52.3
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 3.5e-25 119.0 120 55.0
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.6e-25 118.6 115 55.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 6.0e-25 118.2 119 54.6
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 6.0e-25 118.2 130 59.2
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 6.0e-25 118.2 127 63.8
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 6.0e-25 118.2 132 53.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.0e-24 117.5 118 55.1
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.0e-24 117.5 121 53.7
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.0e-24 117.5 119 52.9
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.3e-24 117.1 120 62.5
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-24 116.7 121 53.7
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.3e-24 116.3 130 50.0
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 3.0e-24 115.9 119 52.9
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 3.0e-24 115.9 112 56.2
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.0e-24 115.9 125 64.0
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.9e-24 115.5 115 62.6
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 5.0e-24 115.2 119 53.8
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 5.0e-24 115.2 119 63.0
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 5.0e-24 115.2 125 60.0
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 6.6e-24 114.8 119 50.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 8.6e-24 114.4 137 50.4
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 8.6e-24 114.4 120 60.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.1e-23 114.0 120 53.3
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.5e-23 113.6 124 51.6
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.5e-23 113.6 136 52.9
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 1.9e-23 113.2 118 50.8
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.5e-23 112.8 122 52.5
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.5e-23 112.8 127 62.2
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.3e-23 112.5 111 55.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 3.3e-23 112.5 111 51.4
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.3e-23 112.1 146 54.8
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 4.3e-23 112.1 114 58.8
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.3e-23 112.1 121 50.4
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.6e-23 111.7 131 50.4
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 7.3e-23 111.3 133 47.4
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.6e-22 110.2 112 51.8
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.6e-22 110.2 121 52.1
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 2.1e-22 109.8 142 51.4
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.8e-22 109.4 123 56.1
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.7e-22 108.6 118 51.7
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 6.2e-22 108.2 116 57.8
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 8.0e-22 107.8 123 47.2
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 8.0e-22 107.8 127 58.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.1e-21 107.5 111 51.4
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 1.1e-21 107.5 164 47.0
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.8e-21 106.7 127 46.5
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.8e-21 106.7 128 50.0
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.1e-21 105.9 110 50.0
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.1e-21 105.9 115 53.0
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.1e-21 105.9 114 51.8
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 3.1e-21 105.9 124 50.0
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.1e-21 105.9 120 51.7
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 5.2e-21 105.1 120 48.3
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.2e-21 105.1 99 70.7
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 6.8e-21 104.8 121 57.9
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 8.9e-21 104.4 127 56.7
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 2.6e-20 102.8 127 48.0
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.4e-20 102.1 148 50.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 9.8e-20 100.9 124 49.2
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.3e-19 100.5 129 46.5
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.7e-19 100.1 117 50.4
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.7e-19 100.1 148 50.0
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.7e-19 100.1 148 50.0
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 3.7e-19 99.0 113 47.8
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 3.7e-19 99.0 123 47.2
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 4.9e-19 98.6 125 46.4
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 6.4e-19 98.2 157 48.4
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 4.1e-18 95.5 100 53.0
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 5.4e-18 95.1 160 41.2
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.1e-17 93.2 159 39.6
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 4.6e-17 92.0 125 52.8
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 4.6e-17 92.0 120 45.0
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 7.8e-17 91.3 138 43.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 6.6e-16 88.2 153 34.0
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 3.3e-15 85.9 151 36.4
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 9.5e-15 84.3 102 46.1
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.8e-14 82.8 103 40.8
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 6.2e-14 81.6 144 38.9
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 2.0e-12 76.6 64 56.2
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.6e-09 67.0 102 41.2
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-06 57.4 106 37.7


User provided reference genes

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